Musa acuminata (wild Malaysian banana): 103988533
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Entry
103988533 CDS
T03447
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mus
Musa acuminata (wild Malaysian banana)
Pathway
mus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103988533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mus03021
]
103988533
03019 Messenger RNA biogenesis [BR:
mus03019
]
103988533
Transcription machinery [BR:
mus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103988533
Messenger RNA biogenesis [BR:
mus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103988533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
TFIIA
Torus
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
103988533
NCBI-ProteinID:
XP_009405357
UniProt:
A0A804JIM6
LinkDB
All DBs
Position
6:14132436..14152609
Genome browser
AA seq
720 aa
AA seq
DB search
MEDPEGALSFDFEGGLDSAAPAAAAAPLAPADPTAAAATAGAVPHSGAADPIAVAAGNVP
GRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKERMPVCRFFRLYGECREQDCVYKHTNED
IKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLGSFGYGSSNRFYHHRNTN
YNQQLDKNQLSSAPGLHNQNTAVKPASSFEPSDVKPSQSLVVQQSHQQQQQQQQQYQQQQ
QQQQQQQQQQQQQQQQQPPPPPTENQVPGIMNVSSNQSTRTASPLPQGQSRYFIVKSCNR
ENLEISVQQGVWATQRSNEPKLNEAFESTENVILIFSINKTRHFQGCAKMTSRIGGLVGG
GNWKYSHGTAHYGRNFSVKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGEQ
LASLLYLEPDGELMAMLIAAESKREEEKAKGVGADEAADNPDIVLFEDNEEEEEEESEEE
DESSGQATQGRGRGRGMMWQPHMPLVRGVRPVVGVRGFPPVMMGADGFGYADGFAAPDLF
GPRIFPPFGGPRFSGDFSAGHMSGLVFPGRPPQPGAVYPMGNLGMMMGPGRAPYMGGMPM
AGIGRSNRPVGVPPFLHPPPPLNNRAAKRDHRRPVSDRNDRYEAGSDQGNRGQEMVGNVG
GVDDDTGYWQGEKAPEDRYGAGRSLQNDESESEDEMAPRRSRHGNGKRKHRVSEGEAALD
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccccgaaggagcccttagcttcgacttcgagggcggcctcgactccgccgct
cccgccgctgccgccgcccccctcgcgccggcagatcccaccgccgcagcggcgaccgcg
ggagcggtccctcactctggcgcagccgatccgatcgccgtagcagctgggaatgtccct
gggcggcggagcttcaggcagacggtgtgccgtcactggctccgtggcctatgtatgaag
ggcgatgcctgcggcttcctccaccagtacgacaaggagcggatgcccgtctgccgcttc
ttccggctctacggggagtgccgcgagcaggactgcgtttataagcacaccaacgaggac
atcaaggagtgcaatatgtataaacttggtttctgccccaatggacctgattgtcggtat
cgacatgcaaagcttcctgggcctcctccccctgtagaagaggttctccagaagatacag
catctgggttcttttggttatgggtcttcaaacagattttatcaccacagaaacactaat
tataaccaacaactggataagaatcagttgtcatcagctcctgggttacataatcagaat
acagcagttaaaccagcttcttcatttgaaccatcagatgtaaaaccatcacagtcccta
gtagtgcagcagtctcatcagcagcagcagcaacaacaacaacaatatcagcaacaacag
caacagcaacagcaacagcaacagcaacaacaacagcaacagcaacagcaaccaccaccc
ccaccaacagagaaccaggtccctggaattatgaatgtctcatcaaatcaatcaaccaga
actgcatctccactccctcagggacaatctaggtattttattgtgaaaagttgcaatcgg
gaaaatctggaaatatctgtccagcagggtgtgtgggcaactcaaaggagtaatgagcct
aaacttaatgaagcatttgaatctacagagaatgttattttaatattctcgatcaacaaa
actcgccatttccagggatgtgctaagatgacctctagaattggtggcttagttggtgga
gggaattggaaatattctcatggaactgcacattatggtcgaaatttttcagtcaaatgg
ttaaagctttgtgagttgtccttcaataaaactcatcatctcaggaatccatataatgac
aacctcccagtgaagataagtcgagattgccaagagttggagccttttattggtgagcag
ttggcctcactgctttatctcgagccggatggtgaactaatggcaatgctgatagctgca
gagtccaaacgtgaggaggaaaaggccaagggagttggtgcagacgaggctgcagataat
ccggatattgtcctgtttgaggacaatgaggaagaggaggaagaggaaagtgaggaggag
gatgagagcagcggccaagccacccaagggagaggaaggggaagagggatgatgtggcaa
ccacacatgccactggtacgtggagtgaggcccgtggttggtgttcgaggcttccctcca
gttatgatgggagctgatggatttggttatgctgatggtttcgctgcaccagatcttttt
ggtcctcggatctttccgccatttggtgggccaagattttctggtgatttttcagcaggc
cacatgtcgggcttagtctttcctggtaggcccccacagccaggggctgtctacccaatg
ggcaaccttgggatgatgatgggacctggtcgggctccatatatgggtggcatgccaatg
gctgggattggccgatccaatcgtcctgtaggagtaccacccttcctacatcctccacct
ccactgaataatcgggctgccaagagggatcatagaagaccagttagtgatagaaatgac
agatatgaggctggatctgatcagggcaacaggggccaggagatggtgggaaatgttggt
ggagtggatgacgacacagggtattggcaaggtgaaaaggctcccgaggatagatacggt
gcaggaagaagcttacaaaatgatgagagcgagagcgaggatgagatggcaccaagacga
tcgaggcatggcaatgggaagaggaagcatcgtgtgtccgagggggaagctgccttggac
tag
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integrated database retrieval system
