Flagellimonas oceani: GVT53_18955
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Entry
GVT53_18955 CDS
T06500
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mut
Flagellimonas oceani
Pathway
mut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GVT53_18955 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mut03400
]
GVT53_18955 (mfd)
Enzymes [BR:
mut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GVT53_18955 (mfd)
DNA repair and recombination proteins [BR:
mut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GVT53_18955 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QII46673
UniProt:
A0A6G7J729
LinkDB
All DBs
Position
complement(4184148..4187591)
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AA seq
1147 aa
AA seq
DB search
MTKTPISQLFEQSPQLGKLRDTIAQPLASARGASQKISIKGLVGSSLSFVISEAFKSAES
PFLLILNDKEEAAYLLNDLEQLIGEKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRIN
SRKKPAIIVTYPDALFEKVVTRKELDKNTQKIKLGDEISLDFLNEVLFEYQFKRVDFVTE
PGEFSVRGGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTDKVKKITIIPNVENK
FTEETRESFLKYISANTVVFAKNPALIYDRIDSFFEKAEESFAKLSQEIKHAKPKELFLD
SALLKEQLKDYLCFEIGTSTPLSHQNTGEMVTERPPAERAGSRSDIIQFNTKPQPAFNKK
FDLLIENLNDNRDAGYSNYIFCSTEQQAKRFHDIFNEVDETVHYQTIIFPLYQGFVDDDL
KLVCYTDHQIFERYHKFHLKNGYAKKQAITLKELNKLEIGDYVTHIDHGIGKFGGLQKID
VEGKKQEAIKLIYGDRDILYVSIHSLHKISKYNGKDGAPPKIYKLGSAAWKKLKQKTKAR
VKKIAFDLIKVYAKRRLEKGFQYAPDSYLQHELEASFLYEDTPDQEKSTQDVKKDMESER
PMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAFQHHRTFSERLKEMPVTV
DYLNRFRTAKEKRETLENLESGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKE
KLRSIKENVDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIESHVIRLNEDIIRD
AVSYEIQRGGQVFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQMEGKKLETLMLSFMNG
EFDVLVSTTIIESGLDVTNANTIFIHNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYE
VMTTEARKRIEALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILS
EAIEELKENEFKELYDEVEGDKEKVYVKEMQLDTDFELLFPDDYINNITERLNLYTQLND
VEDEEGLQKFEAQLVDRFGELPEPVVDLMNSVRVKWIATHIGLEKVIMKKGKFIGYFIAD
QQSSFYQSPVFTQVLQYVQSHPQQAKLKEKQTRTGLRLLLTFDRITSVDKALKVLEPFMP
QEQNVSA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaaaccccgatttcacaactttttgaacagtctccccaacttgggaaactgagg
gatactattgcccaacctctcgcctccgctcgaggtgccagtcaaaaaataagcatcaaa
ggacttgtgggctcttcactttcctttgtgatttcagaagctttcaagtctgccgaatca
ccattcttgttgattttgaacgacaaggaagaagctgcttatcttttgaatgatttggag
cagttgattggagaaaaagatgtccttttttatcccggaagctaccgaagaccgtatcaa
attgaagaaacggacaatgccaacgtacttctgcgtgcagaggtattgaaccgtatcaat
tccagaaagaaaccggcgataatcgttacgtatcccgatgcactttttgagaaagtggtg
accagaaaggaactggacaaaaacacccaaaaaataaagttgggcgatgaaatctcgttg
gattttttaaacgaagtgctgtttgaataccagtttaaacgggtggattttgtgaccgaa
cctggggagttttctgttcgtgggggtattgtggatgtcttttccttctctcacgatgaa
ccttatcgtatcgagttctttggggatgaagtggacagcattcgaacttttgatgtggaa
acccagctttccaccgacaaagtgaagaaaattaccatcatacccaatgtggaaaacaag
tttaccgaggaaacacgggaaagcttcttaaaatatatttcggccaataccgtggtcttt
gcaaaaaaccctgcgctgatctacgaccggattgattccttttttgaaaaagctgaggag
agttttgccaagttgagtcaagagatcaaacacgcgaaacccaaggaactctttctggat
tcagctttgttgaaagagcagttgaaggattatttatgttttgagattggtacttcgact
ccgctcagccaccaaaatacaggagaaatggtcactgagcgcccgcctgccgaacgggca
ggaagtcgaagtgacatcatccaattcaacaccaaaccccagccagctttcaacaaaaaa
tttgacctgcttattgaaaatctcaatgacaatcgggatgcaggttacagcaattatatt
ttctgttccaccgagcaacaggccaagcgttttcacgacatttttaatgaagtggacgaa
acggtgcactaccagaccatcatttttcccttgtaccaaggttttgttgacgatgacctt
aaactggtctgctataccgatcatcaaatttttgagcgttaccacaaattccatctgaag
aatggctacgccaaaaagcaggccatcacgctgaaggaactcaacaagctggaaattggc
gattatgtgacccacattgatcacggtatcggcaagtttggtgggttgcaaaaaattgat
gtggagggcaaaaagcaggaagccatcaaactgatttatggcgaccgtgatattctctac
gtcagcatccattcgcttcataaaatatcgaaatacaatggtaaggacggggcgcctccc
aaaatatacaaactgggttcggcggcttggaaaaaactcaagcaaaagaccaaggccagg
gtcaaaaagattgccttcgatctgataaaagtctatgccaaacggcgattggaaaaagga
tttcaatacgcgccggacagctatttacaacacgagctcgaagcttctttcttgtacgaa
gacacgccggatcaagaaaaaagtacccaggacgtcaagaaggatatggagagcgaacgc
ccgatggaccgcttgatttgtggggatgttggttttgggaaaacggaagtcgcgatacgg
gctgcgtttaaagccgtggacaacggcaaacaggtggctattttggttcccacaacgatt
ttggcttttcagcatcatagaacattttccgaacgattgaaggaaatgcccgtaaccgtg
gattacctcaaccgatttagaacagcgaaggagaaaagggagaccctagaaaatctggaa
agtggcaaagtggatatcattattggaacacaccagttggtcaacaagaatgtaaagttc
aaggatttgggcttgctcattgtggacgaggaacagaaattcggggtttccgtaaaagaa
aaactgcgttccatcaaagaaaacgtggatgtgctcacgctgaccgccacaccgattcca
aggacgttacagttcagtttgatggccgctcgtgatctctctgtcatcaatacccctcca
ccgaaccgctaccccatcgaaagccatgtgattcgattgaacgaggatattatccgtgat
gccgtatcctacgaaatccaacggggcggacaggtgttcttcatccataatcgcattgaa
aacatcaaagaggtggccggaatgctccaacgcttggtgcccgatgccaaaattgggatt
ggacacggacaaatggagggcaaaaaactggaaaccttgatgctttcttttatgaacggt
gagtttgatgttttggtttcgaccaccatcattgaaagtggtttggatgtgaccaacgcc
aacaccattttcattcacaacgccaacaattttggattgagcgacttgcaccaaatgcgc
gggcgagtaggccgaagcaacaaaaaagcgttctgttattttatcacgccaccttatgaa
gtgatgaccaccgaggcccgaaaacgtatcgaagctttggaacaattcaccgagctgggc
agtggtttcaatattgcgatgaaggatttggaaattcgtggtgccggtgacttgttggga
ggagagcagagtggatttatcaacgagattggatttgagacctatcaaaaaatactgtcc
gaagccatagaggaactcaaggaaaacgagttcaaggaactgtatgatgaagttgagggc
gataaggaaaaagtatatgtgaaagagatgcagttggacacggattttgaactgctcttc
ccagatgattacatcaacaatattacagaacgcttaaacctctacactcaattgaacgat
gtggaggacgaggaaggcctacagaaatttgaagcgcaattggtggaccgttttggcgag
ttgcccgagcctgtagtggatttgatgaattccgtccgtgttaaatggattgccacgcat
attggtttggaaaaggtgatcatgaagaagggcaagtttatcggttactttattgcggac
cagcaatccagtttttaccaaagtcccgtgttcacccaagtgctgcaatatgtacagagc
catccccaacaggccaagcttaaggaaaaacagacccgaacaggtttacggttactgttg
acgtttgacagaatcacaagtgtggacaaggcgttgaaggttttggagccttttatgcca
caagagcaaaatgtttcagcatag
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