Mycolicibacterium vanbaalenii: Mvan_4915
Help
Entry
Mvan_4915 CDS
T00449
Name
(GenBank) ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mva
Mycolicibacterium vanbaalenii
Pathway
mva03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mvan_4915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mva03400
]
Mvan_4915
Enzymes [BR:
mva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mvan_4915
DNA repair and recombination proteins [BR:
mva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mvan_4915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABM15688
UniProt:
A1TET8
LinkDB
All DBs
Position
complement(5264986..5267277)
Genome browser
AA seq
763 aa
AA seq
DB search
MVDRYERVKLTNPDKVLYPATGDRRRAVTKAEVFDYYVNVAAAMLPHIAGRAVTRKRWPN
GVTEESFFEKQLASSAPDWLGRGTIVHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWR
FVDGSVGPATRIVFDLDPGEGVTFRQLCEVANEVRDLLADIGLRTFPLTSGSKGLHLYVP
LDEPISSRGASVLAKRVAQQLEQAMPMQVTATMTKSLRTGKVFVDWSQNNANKTTIAPYS
LRGREHPTVAAPRTWEEISDPDLRQLTFDEVLDRLDRDGDLLAGLDPPVPVPDRLTRYRS
MRDTAKTPEPIPGDAPTTGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPS
VNHLAVHTEDHPMEYLTFAGEIPRGEYGGGEVYIWDTGTYETEKFRDNPPDGPDRGGEVI
VTLHGEKIDGRYALIQTDGKNWLAHRMKDQQRPTAADLAPMLTTHGSVQRLTKGQWAFEG
KWDGYRLLVEADHGRLALRSRNGRDVTAEYPQLQALAADLADHHVILDGEAVALDESGVP
SFREMQNRARSTRVEFWAFDILFLDGRSLLRAKYTDRRRVLEALADGGGLIVPPLIGADT
GAEALETARKRGWEGVVAKKRDSTYQPGRRSSSWIKDKLWNTQEVVIGGWRQGEGGRTSG
IGALMLGIPAGGVAGGLQFVGRVGTGFTEKELASLKETLAPLHTDESPFATELPKQDAKG
VTFVRPELVGEVRYSERTSDNRLRQPSWRGLRTDKTPDEVVWE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggtggaccgctatgagcgggtgaagctgaccaacccggacaaggtgctgtacccggcg
acgggggatcgacgtagggccgtcaccaaagcagaggttttcgactactacgtcaacgtc
gccgcggcgatgctgccccacatcgccggccgcgccgtcacccgcaagcggtggcccaac
ggcgtcaccgaggagtcgttcttcgagaagcagctggcgtcctcggcgccggactggctg
ggccgcggcaccatcgtgcacaagtccggaaccaccacctaccccgtcatcgacaccgtc
gagggactggcctggatcgcccagcaggccgcgctggaggtgcacgtccctcagtggcga
tttgtggacggttcggtcggcccggcgacacgcatcgtcttcgatctcgatccgggcgag
ggggtgaccttccgccagctctgcgaagtggccaacgaggtccgggacctgctcgccgac
atcggtctgcggacgttcccgttgaccagcggcagcaagggcctgcacctctatgtgccg
ctggacgagccgatcagttcccggggagcgtcggtgttggccaagagggtggcgcaacaa
ctcgagcaggcgatgccgatgcaggtcacggcgacgatgacgaaaagcctgcggacaggc
aaggtgttcgtggactggagccagaacaacgccaacaagacgaccatcgccccgtattcg
cttcgggggcgcgaacatccgacggtcgccgcgccgcgcacctgggaggagatctccgac
cccgacctgagacagctgacgttcgacgaggttctcgaccggctggaccgcgacggtgat
ctgctcgccgggctcgatccgccggttccggtgccggaccggctcacccggtaccgcagc
atgcgcgacaccgccaagacgcctgagccgattccgggcgacgcgccgacgaccgggaac
aacgacaagttcgtcatccaggaacaccatgcccgccgcctgcactacgacttccggctg
gaacgcgacggcgtgctggtcagttgggcagtgcccaagaacctgcccgacacaccgtcg
gtgaaccacctcgccgtgcacaccgaggaccacccgatggagtacctgaccttcgcgggt
gagatccccaggggcgagtacggcggcggcgaggtctacatctgggacaccggcacctac
gagaccgagaagttcagggacaacccgcccgacggcccggaccgcggcggcgaggtcatc
gtgacgctgcacggcgagaagatcgacggccggtacgcgctgatccagaccgacggcaag
aactggcttgcgcaccggatgaaggaccagcaacggcccaccgcggcggatctggcgccg
atgctgacgacccacggctctgtgcagcggctcaccaaggggcagtgggcttttgagggc
aagtgggacggataccgcttgctggtcgaggccgatcacggcaggttggcactgcgctcg
cgcaacggccgcgacgtcaccgccgagtacccgcagttgcaggcgctggccgccgacctc
gccgaccaccacgtgatcctcgacggggaggcggtggcgctcgacgagtcgggggtgccg
agtttccgggagatgcagaaccgggcccgctcgacccgggtcgagttctgggcgttcgac
attctgtttctcgacggccgatcgctgctgcgggccaagtacaccgaccgccgccgggtg
ttggaagcgctggccgacgggggtggactgatcgtgcccccgttgatcggcgccgacacc
ggggcggaggcgctggagaccgcgcgcaagaggggctgggagggtgtggtcgccaagaag
cgggactccacctaccagccgggcaggcggtcgtcgtcgtggatcaaggacaagctgtgg
aacacgcaggaggtggtgatcggcggctggcggcaaggcgagggtggacgcaccagcggg
atcggcgcgttgatgctcggcatccccgccggcggtgtggccggcggcctgcagttcgtc
ggccgcgtcggcacgggcttcaccgagaaggagctggcgtcgttgaaggagacgctggca
ccgctgcacaccgatgaatcacccttcgccacagagcttcccaagcaggacgcaaaaggc
gtgaccttcgtgcggcccgaactggtgggagaggtgcgctacagcgaacgcacctcggac
aaccggttgcggcagccgagctggcgcggactgcgcacggacaagacgcccgacgaggtg
gtctgggagtag
DBGET
integrated database retrieval system
