Microcoleus vaginatus: D0A34_20740
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Entry
D0A34_20740 CDS
T08026
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mvag
Microcoleus vaginatus
Pathway
mvag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mvag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0A34_20740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvag03400
]
D0A34_20740 (mfd)
Enzymes [BR:
mvag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0A34_20740 (mfd)
DNA repair and recombination proteins [BR:
mvag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0A34_20740 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UNU20962
LinkDB
All DBs
Position
complement(5076525..5080100)
Genome browser
AA seq
1191 aa
AA seq
DB search
MTFSSIIRTLGRSPLATELLNKLKRHRCLQLNGIARLPKGLVASALAQQEGRSLLVVTAT
LEEAGRWVAGLEAMGWQTVHFYPTSEASPYELSYSDENEMTWGQMQVLADLVEKRETNAN
SKPIAIVATERALQSHLPPPAAFEPYCLTLKRGAVQDSKILDRQLVSMGYDRVALVEMEG
QWSRRGDIVDVFPVAAELPVRLEWFGDDLEQIREFDPSSQRSLDKVERLVLTPTNFNTII
KAVLSEKKLDAINHLGSFDPENEGENEAERFVRRLLGLAFEQPASLLDYLTENTLVVIDE
PQGCEGHSDRWFENAQEQWNNCNRESAVAGEATEKLPLANLKVPKIHRTFAESMADVAAF
DRLELSELAEDPTAKKFQSSADIDQLAPAINLASRPVPVMPHQFAKLSQMLREERDRGFT
IFLVSAQPSRSVSLLSEHDCPAQFVVNPRDYLAIDKLQLQHIPVALKYSGLAELEGFILP
TFRIVLITDREFYGQHSLATFSYVRKRRRAASKQVDPNKLSPGDYVVHRQHGVGKFIKLE
RLTIDRETREYLLIQYADGTLRVAADQLGALSRFRTVGDKVPDLNKLTGQTWEKTKTKVR
KAVKKLAVDLLNLYAKRAKQTGYAFPPDMPWQQELEDSFPYQPTPDQLKATQDVKRDMEG
DRPMDRLVCGDVGFGKTEVALRAIFKAVTAGKQVALLAPTTILTQQHYHTLSERFSPYPI
EVGLLNRFRTETERREIHKRLATGELDVIVGTQAVLSKAIKFRDLGLLVVDEEQRFGVKQ
KEAIKALKTEVDVLTLTATPIPRTLYMSLSGIREMSLISTPPPSRRPIQTHLAPYNPEVV
RSAIRQELDRGGQVFYVVPRIEGIDELAAQLQEMVPSARIAIAHGQMDASELESVMLTFS
AADFDILVCTTIIESGLDIPRVNTILIEDAQRFGLGQLYQLRGRVGRAGIQAHAWLFYPK
QNKLSDAARQRLRAIQEFAQLGSGYQLAVRDMEIRGSGDVLGTEQSGQMEAIGFDLYAEM
LEEAIREIKGQEIPKVEDAQIDLTLTAFIPADYIADLDQKMSAYRSVASANTPEELQQIQ
ADWCDRYGPIPLPAQQLIRVVELKQIAKKIGFSRIKPENKQHIVLETAMEEPAWNLLKAN
LPEHLRSRFVYSKGKVTIRGMAVLTAQKQLDNLIDWLGKMQGALPEANVGF
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgactttctcttcaataattcgtaccctggggcgatcacccctagccacagaactcctc
aacaagctcaagcgccatcgctgcttgcaactcaacggcatcgctcgcttgcccaaaggt
ttagtagcttccgccctcgcacagcaagaagggcggagtttactggtagtgacggccact
ctagaagaagcgggccgctgggtggcagggctggaggctatgggctggcagactgtgcat
ttttacccaacttcggaggcttcgccctacgagctatcttactccgacgagaacgaaatg
acttggggacaaatgcaggtgctggcggatttggtcgagaaacgagaaacaaacgccaat
tctaagccgatcgcgattgtagctaccgaaagagctctccagtctcacttgccgccacct
gctgcttttgaaccctactgtctgacgctgaagcgaggtgcggttcaagactcgaagata
cttgaccgccaactggtgtcgatggggtacgatcgggtggctctggtggaaatggagggt
cagtggagccgtcgcggtgatattgtcgatgtgtttccggtggcggctgagttgccggtg
cggctggagtggtttggggatgatttggagcaaattcgggagttcgatccctcttcgcag
cgatcgctcgataaggtcgagcgattagttttaactcctactaattttaacacaattatt
aaagcagttttatctgaaaaaaagcttgatgcaatcaaccacctaggctctttcgacccc
gaaaatgaaggggaaaatgaagcggaaagatttgtccgcaggctgttgggtttagcgttc
gagcaacctgcatctttgttggattatttgacagaaaatactttagttgttattgacgaa
ccccaagggtgcgaaggtcacagcgaccgctggtttgagaatgcacaggaacagtggaat
aattgcaatcgggaatcggcagttgctggtgaggccacagaaaaattgccacttgctaat
ttgaaagttccgaaaattcaccgcacttttgctgaatcaatggcagatgtcgcagctttc
gatcggctagaactttcagaattggcagaagatcctactgctaaaaaatttcaaagctct
gcggatatcgaccagctagcgcctgcgattaatttggccagcaggcctgtgccggtgatg
cctcaccaatttgcgaagctgtctcaaatgctcagggaagagcgcgatcggggttttacc
atttttctggtttctgctcaaccgagtcgatcggtttctctgctttcggaacacgactgt
ccggctcagtttgtggtgaatccgcgcgattatttggcgatcgacaaattgcaattgcag
cacattccggttgctttgaagtacagcgggctggcagaattggaagggtttattctgccg
acttttcggattgttttaattaccgatagggaattttacggtcagcattctttggctact
tttagctacgtccgcaagcgccgtcgcgctgcttctaagcaagtagacccgaataaatta
agccctggtgattatgtggttcaccgccagcatggagtgggtaaatttatcaagttggaa
cgtttgacgatcgatcgcgaaactcgcgagtatttattgattcaatacgctgacggtact
ctgagagtggcggcagatcagttgggggctttgtcgaggtttcggactgtaggcgataaa
gtaccggatctaaacaagctgaccggccaaacttgggaaaaaactaaaacaaaggttcgc
aaagctgttaagaaattggcagtggatttgctgaatctttatgctaaaagagctaaacaa
acaggttacgcttttcctcctgatatgccttggcaacaagaattagaggattcttttcct
taccagccaaccccggatcagttgaaggcaactcaggatgtgaaacgcgacatggagggc
gatcgaccgatggatcgcttggtctgtggcgatgttggttttggcaagacagaagttgct
ctgagagcgatttttaaggcggttacggcgggcaagcaggtggctttgctcgcgccgacg
acgattttgacccaacagcactatcacacgctctcagagcgtttttccccttatccgatc
gaagttggtttgctcaatcgctttcgcacggaaaccgagcgccgggagattcacaagcgt
ttggcgactggggaattagatgtgattgtcggtactcaagctgttttgagcaaagccatt
aaatttcgggatttgggcttgttggtggtggatgaagaacagcggtttggagttaagcaa
aaggaagcaattaaagctctcaaaacagaggtagatgttctgactctgacagcaacgccg
attccccggactttgtatatgtcgctgtcggggattcgcgagatgagtttgatttcgact
ccgcctcccagcaggcgcccgattcagacgcatttggctccctataacccggaagtggtg
cgatcggcaattcgtcaagaattggacaggggcggtcaggttttttacgtggtgccgcgg
attgaggggattgatgagttggccgctcagttgcaggagatggtaccgtctgccagaatt
gcgatcgcccacggtcaaatggatgcttcggaattagaatcggtcatgctgactttcagt
gcggcagatttcgatattttggtgtgcacgacgattattgagtcgggtttggatattccg
cgtgtcaatactattttaattgaagacgcgcagcgctttggtttgggtcagctttaccag
ttgcggggacgggtgggacgcgcggggattcaagctcatgcttggctgttttatcccaag
cagaacaagctgtctgatgctgcaaggcagcggctgcgggcaattcaagagtttgcccag
ttgggttcgggctatcagttggccgtccgagatatggaaattcgcggttcgggtgatgtt
ttgggtactgaacaatctggtcaaatggaggcgatcggttttgatttgtatgctgaaatg
ttagaggaggctattcgggaaattaaaggtcaggaaattccgaaagttgaagacgcgcaa
attgacctaactttgacggcgtttattcctgccgattacatcgcagatttggatcaaaag
atgagcgcttaccggtctgtggcttctgctaatacccctgaagaattacagcagattcag
gctgattggtgcgatcgttatgggccgattcctcttccagcccagcaacttatccgtgtg
gtcgaactcaaacaaatcgctaaaaaaatcggtttttctcggatcaaaccggagaataag
cagcacatagttttggaaacagctatggaggagcctgcttggaatttgctcaaggctaat
ttgccggaacatttgcgctctcgttttgtctacagcaaggggaaggttactattcgaggt
atggcggttttgacggcccaaaagcaattagataatttgattgattggctgggtaaaatg
cagggcgctttgccggaagcaaatgttggattttaa
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