Microbulbifer variabilis: MJO52_04515
Help
Entry
MJO52_04515 CDS
T08656
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJO52_04515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mvb03019
]
MJO52_04515
03009 Ribosome biogenesis [BR:
mvb03009
]
MJO52_04515
Enzymes [BR:
mvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MJO52_04515
Messenger RNA biogenesis [BR:
mvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MJO52_04515
Ribosome biogenesis [BR:
mvb03009
]
Prokaryotic type
rRNA helicases
MJO52_04515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrA_inter
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
USD22399
LinkDB
All DBs
Position
1014000..1015769
Genome browser
AA seq
589 aa
AA seq
DB search
MTDTPKPAGFDQLGLPPEILTAIEKLGYETPSPIQAQTIPSLLENRDVLGQAQTGTGKTA
AFALPLLSKLDLKNRRPQALVLAPTRELAIQVAEACQAYASNLKGFHVAPIYGGADYRGQ
IQQLKRGVQLVVGTPGRVMDHMRRGSLDLSNLSTLVLDEADEMLRMGFIDDVQWVLEQIP
EERQIALFSATMPKEIARIAREHLHEPVEVKIRVKQETAETIRQRYWPVGGLHKLDALTR
ILEAEPVDATIIFVRTKNSTVELADKLAARGFASAALNGDMAQNLREQVIDKLKNGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLR
VIEKATKKPIEKLELPSAEMVNSARMQRFRERITATLEGQTDLAPYRLLVEEFLAQNEVD
PLDVAAALASMAQGDQPLLIKEQESKPRRERERRERDDDFEGRRRKKDGYEKDRKMPAPD
EGLERYRIEVGREHGVRPGGIVGAIANEVDLDSSYIGRIEIYGDFTTVDLPEGMPKEIFQ
HLKKVRVAGKPMKISRFDESAVKAKGKPKGKPKGKPKGKPKFKRDNGGE
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataccccaaaaccggccggcttcgaccagctgggcctgccgcctgaaatccta
actgccatcgaaaaactgggctatgagaccccctctccgattcaggcacagacaatcccc
tccctgttggagaatcgcgatgtgctgggccaggcccagaccggcaccggcaaaacagct
gcttttgcactgcctttactgtccaaactggacctgaaaaaccgtcggccgcaagctttg
gtactagcgccgactcgtgaattggctatccaggtagctgaggcttgccaggcttatgct
tctaacctgaaaggcttccatgtggctccaatttatggcggtgccgactatcgtggacag
atccaacaattaaaacgcggtgtgcagctagtggtgggtacccctggccgagtgatggat
catatgcgtcgcggttccctggatctctccaatctgagtaccttggtgctggatgaggcc
gatgaaatgttgcgcatgggttttatcgacgatgtgcagtgggtattggaacagattccg
gaagagcgccagatcgcgctgttctccgccaccatgcccaaagagatcgctcggatagct
cgcgagcatttacacgagccagttgaagtcaaaatccgtgtcaagcaagagactgcggag
accatccgccagcgctactggcccgtgggcggtttgcataaactggatgccctgactcgt
atcctcgaagccgagccggtagatgccacgattattttcgtacgcaccaaaaacagcact
gttgagcttgcagacaagctggccgcgcgcggttttgccagtgccgccctgaatggcgat
atggcgcagaacctgcgcgagcaggtaatcgataagcttaagaacggcaagctcgatatt
gttgtggccactgatgtggcagcgcgcggactggatgtgaaacgtatcagccacgtgatc
aactacgacatcccttacgataccgaagcctatattcatcgtatcggtcgtaccggccgc
gccggtcgtgaaggggatgccatcttgtttgtggcgccgcgtgaacgccgtatgctacgt
gttattgagaaggccaccaagaagcccattgagaagctggagttacccagtgccgagatg
gttaacagtgcccgtatgcagcgcttccgcgagcgtattaccgcaaccctggaaggccag
acagacctggcaccctaccgcttgctggtggaggaattcctcgcccagaatgaagtggac
ccactggatgtcgctgctgccttggcctccatggcccagggtgaccagccgctgctgatc
aaagagcaggagtccaagccgcgcagggaaagggaacgccgcgagcgggacgatgatttt
gaagggcgtcgccgtaagaaagacggttatgaaaaagaccgcaagatgccggcacccgat
gaggggctggagcgctaccgtatcgaagttggtcgcgagcacggtgtgcgtccgggtggt
atcgttggtgccattgccaacgaggtggatctggatagttcctatataggtcgtattgag
atctatggagacttcaccaccgtggaccttccggaaggtatgcccaaggaaatcttccag
catctgaagaaggtacgggtggctggtaagcccatgaagatttcccgttttgatgagtcg
gccgttaaggcgaagggcaaacctaaaggtaagcccaaaggcaaacccaagggcaagccc
aagttcaaacgggataatggcggggagtaa
DBGET
integrated database retrieval system
