Mannheimia varigena USDA-ARS-USMARC-1312: X874_18250
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Entry
X874_18250 CDS
T03028
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Pathway
mvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X874_18250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvg03021
]
X874_18250
03400 DNA repair and recombination proteins [BR:
mvg03400
]
X874_18250
Enzymes [BR:
mvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X874_18250
Transcription machinery [BR:
mvg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X874_18250
DNA repair and recombination proteins [BR:
mvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X874_18250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Arylsulfotrans
Motif
Other DBs
NCBI-ProteinID:
AHG78458
LinkDB
All DBs
Position
complement(1964966..1969249)
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLVKFLKAQTKSSDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFMDAEERWGDEFEAK
MGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKITKRLKTLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREEPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRVTEYEKNEAGEFVAKTELVDTTIGRSILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEA
EVAEIQEQFNGGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTDEVLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCNTDYGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKDGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVNAGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDSNGNDILIPGTDVPAQYFLPGKAIVTLDDGAEIAVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATITNAYDSEFLDGEQVEVARVKIANRKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEAGI
VLAPGYEAPAAKENSFVTDADIEAEFEFVADDATQSLAAMLNAGDEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtgaagtttttaaaagcacaaacaaaatcaagcgatgattttgatgtg
attaaaattggtttagcatcaccggacaagatccgttcttggtcttttggtgaggtgaaa
aagcctgaaaccattaactaccgtaccttcaaaccggagcgtgacggtttattctgtgct
cgtatcttcgggccggtaaaagattacgaatgtttatgcggtaaatacaaacgtttaaaa
caccgtggtgtaatctgtgaaaaatgtggtgttgaagtaacgcaaactaaagtacgccgt
gagcgtatggggcatattgaattagcttgcccggttgcacacatttggttcttaaaatca
ctgccgtcccgtatcggcttaattttagatatgccgttgcgtgatattgagcgtgtactt
tactttgaaagctatgtagtaactgaaccgggtatgactgatttagaaaaaaatcagtta
ttaactgaagaacagtttatggatgctgaggagcgttggggcgatgagtttgaagcaaaa
atgggtgcagaaggtatccaagcattacttcgtgatttagacttagaacaccaatgcgaa
acgttacgtgaagaattacaagaaaccaactctgaaaccaaacgtaaaaaaatcactaag
cgtttaaaaaccttagaagcgttcttacaatctggcaacaaaccagaatggatggtaatg
accgttcttcctgtgttaccaccagatttacgtccattagtaccgcttgatggtggtcgt
tttgcaacttctgacttaaacgacttataccgccgtgtaattaaccgtaacaaccgttta
aaacgcttgttagacttagttgcaccggacattatcgtgcgtaacgaaaaacgtatgtta
caagagtctgttgatgcgttattagacaacggtcgccgtggtcgtgcaatcaccggctct
aacaaacgtccgttaaaatcacttgcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgtggattactcaggtcgttctgtaatcaccgtaggtcca
tacttacgtttacaccaatgtggtttgccgaagaaaatggcgttggaattattccgtccg
tttatctactctaaattagagagccgtggcattgcatcaaccatcaaagcggcgaagaaa
atggttgagcgtgaagagccgattgtatgggatatccttgcagaagtgattcgtgagcac
ccaatcctacttaaccgtgcgccaacgcttcaccgtttaggtatccaagcgttcgagccg
ttattgattgagggtaaagcaatccagttacacccactcgtgtgtgcggcgttcaacgcg
gacttcgacggtgaccaaatggcggttcacgttccattaactcttgaagctcagttagaa
gctcgagcgttaatgatgtcaaccaacaacgtactttcaccggcgagtggtgatccgatc
atcgttccatctcaggacgttgtattaggcttgtactatatgactcgtgagaaagtaaac
ggtaaaggtgaaggaatgtacttccttgatcctcgtgaagcggaaaaagcataccgtaca
ggtcaagcagaattacactctcgtgtgaaagtgcgtgtgactgaatacgagaaaaatgaa
gcaggcgaatttgttgctaaaacggaattagtagatactacaattggtcgttcaatctta
tggatgatcgcaccaaaaggtatgccatttagcttgttcaaccaaaccttaggtaaaaaa
gcgatctcgaaattaatcaacgagagctaccgtcgtttaggcttgaaagagtctgtggtt
ttggctgaccaaattatgtacactggtttcgcttacgctgctcgttcaggtgcgtctgtt
ggtatcgatgatatggttatcccagagcaaaaatacgcgattattgaagcggctgaagct
gaagtggcagagattcaagaacaattcaatggcggtttagtaacagctggtgagcgttat
aacaaagtaatcgatatttgggctgcagcaaacgaacgtgttgctaaagcgatgatggaa
aacctttcaacggaagaagtgatcaaccgtgaaggtaacccggaaaaacaagcgtcattc
aacagtatctttatgatggcggactctggtgctcgtggttctgcagctcagattcgtcag
ttagcgggtatgcgtggcttgatggcacgtccggatggttcgattattgaaaccccaatc
acggcaaacttccgtgaaggcttgaacgttcttcagtactttatttcaacccacggtgct
cgtaaaggtttggcggatacggcattaaaaacagcaaactccggttacttaacccgtcgt
ttagttgacgtggcacaagacttagtcattatcgaagatgactgcggtacacacgaaggt
atcgtaatgactccgttaattgagggtggtgatgtaaaagaagctctgcgtgatcgtgta
ttaggtcgtgtagtagcagaagacgtattaaaaccgggtacggatgaagtattaattcca
cgtaacaccttattagatgaaaaatggtgtgatgtagttgatcgtgaatcagttgatgta
atcaaagtacgctctgttgtaacctgtaatacagactacggtgtgtgtgcgaaatgttac
ggtcgtgatttagcacgcggacacttaatcaaccaaggtgaagcggttggtgttattgcg
gcacaatcaatcggtgagccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcatctgcggcagcgaaagaatctagcattcaagtgaaaaatgcaggtacgattaag
ttaactaacgcgaaatttgtaacgaacaaagatggtaaaatcgtattaacgtctcgtaat
actgaattaacagttattgatacattcggtcgtaccaaagagaactacaaagtgccttac
ggtgcagtgttatcgaaacatgatggtgcagaagttaatgcaggcgaagtagtagcgaac
tgggatccgcatacaatgccagttatctcagaggtatcaggtcgtatccaatttagcgat
atcgttgatggcttaactgtaactcgtcaaacggacgaattaacaggtttatcatcaatt
gtggtgcaagatgtgggtgaacgtgcaactgcaggtaaagatttacgtccagctctacgt
ttagtagatagcaacggtaacgatatcttaattccgggtacagatgttccagcacaatac
ttcttaccaggtaaagctatcgtaaccctagatgacggtgcggaaattgcagtgggtgaa
gcattagcacgtattccacaagaatctgttggtacgaaagatattactggtggtcttcca
cgcgttgcagacttattcgaagctcgtaaaccgaaagagccggcaatcttggcggaaatt
tcaggtattgtttcatttggtaaagaaaccaaaggtaaacgccgcttggtaattactcca
gctgaaggagaagcgtttgaagaaatgattccaaaatggcgtcaattaaacgtattcgaa
ggcgaaatggtacagcgtggagatgtaatttcagacggtgcagaaacgccacacgacatc
ttacgcttacgtggtgtacacgctgtaacagactacatcgtaaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaggttatcgttcgccaaatg
ttacgtaaagcaaccattaccaatgcttacgactctgaattcctagacggagaacaagtc
gaagtggctcgtgtgaaaattgctaaccgcaaacgtgaagcagaaggcaaaccacttgtt
gagtttgaacgtgaattgcttggtattaccaaagcatctcttgcaactgagtcatttatc
tcagccgcatcgttccaagaaactactcgagtgcttaccgaagcagcagtcgcaggtaaa
caagatgagttacgcggcttaaaagaaaacgtaatcgttggtcgtttaatccctgcaggt
actggttttgcttaccaccaagctcgtgcaaaaaaacgtgcacaacttgaagcaggcatc
gtgctagcccctgggtacgaagcaccagctgcaaaagaaaactcatttgttactgatgca
gacatcgaagctgaatttgaatttgtggcagacgatgcaactcaaagtctagcggcaatg
ttaaatgcaggtgatgaagagtag
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integrated database retrieval system
