Mycolicibacterium vaccae: MYVA_4735
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Entry
MYVA_4735 CDS
T04356
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mvq
Mycolicibacterium vaccae
Pathway
mvq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mvq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYVA_4735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvq03400
]
MYVA_4735
Enzymes [BR:
mvq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYVA_4735
DNA repair and recombination proteins [BR:
mvq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYVA_4735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Big_4
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
ANI41808
LinkDB
All DBs
Position
complement(4931281..4933560)
Genome browser
AA seq
759 aa
AA seq
DB search
MVDRYDRVKLTNPDKVLYPATGTTKGEVFDYYVNVAAAMLPHIAGRAVTRKRWPNGVEAE
AFFEKQLASSAPDWLDRATIVHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFTDEG
KVGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITDIGLRTFPLTSGSKGVHLYVPLDEP
ISSRGASVLAKRVAQQLEQTMPKQVTATMTKSLRAGKVFVDWSQNNGNKTTIAPYSLRGR
EHPTVAAPRTWEEIEDPDLKHLTFDEVLDRLDRDGDLLADLDPPVPVPDRLTRYRSMRDT
AKTPEPVPADAPRTGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPESPSQNHL
AVHTEDHPMEYLTFAGEIPKGEYGGGEVYVWDTGTYETEKFRDHAPDGPAKGGEVIVTLH
GEKIEGRYALIQTDGKNWLAHRMKDQNKPTPADLAPMLATEGSVERMTKGQWAFEGKWDG
YRLLVDADRGKLTLRSRRGRDVTGEYPQLQALAADLADHHVILDGEAVALDESGVPDFGQ
MQNRARSTRVEFWAFDILFLDGRSLLKAKYSDRRRLLEALAEGGGLIVPAAINADTGPEA
LEAARKKRWEGVIAKKRDSAYQPGRRSSAWIKDKIWNTQEVVIGGWRQGEGGRTSGIGAL
MLGIPDDDGLQFVGRVGTGFTEKELAALKKTLTPLQADESPFAARLPTQDAKGVTFVRPE
LVGEVRYSERTSDNRLRQASWRGLRDDKTPDEVGWESPR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtggtggaccgctatgaccgggtgaagctgaccaacccggacaaggtgctgtatccggcg
accggcacgaccaaaggtgaagtcttcgactattacgtcaacgtcgcggcggcgatgctg
ccgcacatcgccggccgggctgtcacacgcaagcggtggcccaacggcgtcgaggcggag
gcgttcttcgagaagcagctcgcctcgtccgcgcccgactggctggaccgcgcgaccatc
gtgcacaagtccggcaccaccacctaccccgtgatcgacaccgtcgaggggctggcctgg
atcgcgcagcaggcagcgctggaagtgcacgtcccgcagtggcggttcacggacgagggg
aaggtcggtccggccacccgcatcgtgttcgacctcgaccccggcgaaggggtgacgttc
cgtcagctgtgcgaggtcgcacacgaggttcgggatctgatcaccgacatcgggctgcgg
accttcccgttgaccagcggcagcaagggtgtgcacctgtatgtcccgctggacgagccg
atcagctcgcggggcgcatcggtgctggccaagcgtgtcgcccagcagcttgagcagacg
atgcccaagcaggtcaccgcgacgatgacgaaaagtctgagggccggcaaggtgttcgtg
gactggagccagaacaacggcaacaagaccaccatcgcgccgtactcgcttcggggccgc
gaacacccgaccgtcgcggcgccgcggacctgggaggagatcgaagatcccgacctcaag
cacctcacgttcgacgaggtgctcgaccggctcgaccgggacggtgatctgctcgccgac
ctcgacccgcccgtcccggtgcccgaccggctcacccgctaccgcagcatgcgcgacacc
gccaagaccccggagccggtccccgccgacgcgcccaggaccggcaacaacgacaagttc
gtcatccaggaacaccacgcgcgccggctgcactacgacttccgtctcgaacgcgacggg
gtgctggtcagctgggcggtgccgaagaacctgcccgaatcgccgtcgcagaatcacctc
gccgtgcacaccgaggaccatccgatggagtacctgaccttcgccggcgagatccccaag
ggggagtacggcggtggcgaggtctatgtctgggacaccggcacctacgagaccgagaag
ttcagggaccacgcgcccgacggcccggccaagggcggcgaggtgatcgtcacgctacac
ggcgagaagatcgagggccgctacgcgctgatccagaccgacggcaagaactggctggcc
caccggatgaaagaccagaacaagccgaccccggcggatctggcgccgatgctggccacc
gaggggtcggtcgagcggatgaccaagggacagtgggccttcgagggaaagtgggacggc
taccgcttgctcgtcgacgcggaccggggcaagctcacgctgcggtcgcggcgtggacgc
gacgtcaccggcgagtacccgcagctgcaggcgctggcagccgatctcgccgaccatcac
gtgatcctggacggcgaggcggtggcgctcgacgagtccggcgtacccgacttcggtcag
atgcagaaccgggcgcgttcgacccgggtggagttctgggcgttcgacatcctcttcctc
gacggccgctcactgttgaaggccaagtactccgaccgtcggcggctgctggaggcgctg
gccgagggcggcggactgatcgtgcccgcggcgatcaacgccgacaccggacccgaagca
ctcgaggcggcgcgaaagaagcggtgggagggcgtcatcgcgaagaagagggactcggcc
taccaacccgggcggcgttcgtcggcgtggatcaaggacaagatctggaacacccaggaa
gtcgtgatcggcggctggcgacagggggagggcggacgcaccagcggcatcggcgcgctg
atgctcgggatccccgacgacgacggcctgcagttcgtcggccgggtcggcaccgggttc
accgagaaggaactggccgcgttgaagaagacgctgacacccctgcaggccgacgaatca
cccttcgcggcaaggcttccgactcaggacgccaaaggggtcacgttcgtgcgccccgaa
ctggtcggggaagtccgctacagcgagcgcacatcggacaaccggctgcggcaggcgagt
tggcgtgggctgcgcgacgacaagacccccgacgaggtcgggtgggaatctccgcggtag
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