KEGG   Microbacterium wangchenii: E4K62_11270
Entry
E4K62_11270       CDS       T06490                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mwa  Microbacterium wangchenii
Brite
KEGG Orthology (KO) [BR:mwa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E4K62_11270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mwa03400]
    E4K62_11270
Enzymes [BR:mwa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E4K62_11270
DNA repair and recombination proteins [BR:mwa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E4K62_11270
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QBR89208
UniProt: A0A6D1IEH3
LinkDB
Position
2336340..2338925
AA seq 861 aa
MAAGEQTVRIEGRRLRITNLDKVLYPDTGTTKGEVIAYYTRIAPVLIPHVTGRPVTRKRW
PDGVGTADDPGMSFFAKDLEAGAPSWVQRRPIPHSSGPKDYPLVGDVPTLVYLAQVASLE
LHVPQWRFAPDGERGNPDRLVLDLDPGPGVGLAECAEVARQARAILSDMGMEPYPVTSGS
KGIHLYAPLPGEQSSDAITAFAKELARAIEADSPDLVVSQMAKSARPGKVFIDWSQNNGA
KTTIAPFSLRGRAHPTVAAPRTWEELDDPELRHLLFSEVLERVEASGDPMAALGFTAGAR
ATEDGPLGQYIAKRTAGATPEPVPANPAGAAASEGLPRFVIQEHHATRLHWDLRLERDGV
LASWAVPKGVPSTTARNNLAVQTEDHPMEYATFAGTIPAGQYGAGSMTIWDEGRYELEKW
RDDEVIFTLEGRPGGPLGRVRLALIRTDGSGEKSTWLLHRMKTDAAGHPQADGAPVVPTD
ADDAAPAPDHHAPAPAAEEDADPSAVDADDAGPSLSDPADAALSGPAHAGARIPPRAELR
PMLATTATPGIARQAARRWSGEDDAWVEAKWDGIRAIGVWDGQRLHLRARSGNDVTAKYP
ELTTVDLGLGPEPAVLDGEIVALDGQGRPSFPLLQTRMNLEKPREIARETPRTPVKLFLF
DVLALGGRDLAPRPLRERRRALEKLATAASGPLVLPPVFDDVDAALAASRSLGLEGIVVK
DPASPYRRGERTEQWLKVKLTRTQEVVIGGVRPGKGGRSGTIGSLLLGVPGDDGLHYAGR
VGSGFSEATLAQLEARLTPLRTDENPFVDVPRPDASDALWVRPDLVGEVEFAEFTPGGIL
RHARWRGLRPDKTPDEVVRES
NT seq 2586 nt   +upstreamnt  +downstreamnt
atggcggcgggtgaacagacggtgcgcatcgagggccggcgactgcgcatcaccaacctc
gacaaggtgctctaccccgacaccggcaccaccaagggcgaggtcatcgcttactacacc
cgcatcgcccccgtgctcatcccgcatgtgacgggtcgaccggtcacgcgaaagcgctgg
cccgatggcgtcggcacagcggatgaccccggcatgtcgttcttcgccaaggacctggag
gccggtgcgccgtcgtgggtgcagcgccgccccatcccgcactcctccggacccaaggac
tacccgctcgtgggagatgtgcccaccctcgtctacctcgcccaggtcgccagcctcgag
ctccacgtgccgcaatggcggttcgcccccgacggcgagcgcggaaaccccgaccgcctc
gtgctcgacctcgaccccggccccggtgtgggcctcgccgagtgcgccgaagtggcgcga
caggcgcgcgcgatcctctccgacatgggcatggagccctaccccgtcaccagcggcagc
aagggcatccacctgtacgcgccgctccccggcgagcagtccagtgatgccatcacggcg
ttcgcgaaggagctggcccgcgcgatcgaggccgactcccccgacctcgtcgtcagtcag
atggccaagtcggcccgcccgggcaaggtgttcatcgactggagccagaacaacggcgcc
aagacgaccatcgcgcccttctcgctgcgcggacgcgcccaccccaccgtcgcggcgcct
cgcacgtgggaggagctcgacgacccggagctgcgtcacctcctgttctccgaggtgctg
gagcgggtggaggcctccggcgacccgatggccgcgctggggttcaccgccggcgcgcgc
gcgacggaagacggcccgctgggtcagtacatcgccaagcgcaccgccggcgccacaccc
gagccggtgcccgcgaaccccgccggcgccgccgcatccgagggcctgccgcgcttcgtc
atccaggagcaccatgccacccggctgcactgggatctgcgcctggagcgcgacggggtg
ctggccagctgggccgtcccgaaaggcgtgccctccaccaccgcgcgcaacaacctggcg
gtccagaccgaagaccatcccatggagtacgcgacgttcgccggcacgatcccggcaggt
cagtacggcgcgggctccatgacgatctgggacgagggccggtacgagctggagaagtgg
cgcgacgacgaggtgatcttcaccctcgaggggcgcccgggaggtccgctcgggcgcgtg
cgcctcgccctcatccgcaccgacgggagcggtgagaagtcgacgtggctcctgcaccgc
atgaagacggatgcggcgggccatccgcaggccgacggggcgcccgtcgtccccaccgat
gccgacgacgccgcgcctgcacccgaccaccacgcgcccgcgccggcagcggaggaggac
gccgatccgtccgccgtcgacgcggacgacgccggcccgtccctctccgaccccgccgac
gccgccctctccggccccgcccacgccggcgccaggatcccgccgcgcgccgagctgcgc
ccgatgctcgccacgaccgcgacgccggggatcgcgcgccaggcggcgcggcgctggtcg
ggcgaggacgacgcgtgggtggaggcgaagtgggacggcatccgcgcgatcggagtgtgg
gacgggcagcggttgcacctgcgcgcccgcagcggcaacgacgtcaccgcgaaatacccc
gagctgacgaccgtcgacctggggctgggccccgaaccggcggtcctggacggcgagatc
gtcgccctggacgggcaggggcggccgagtttcccgctcctgcagacccggatgaacctg
gagaagccgcgcgagatcgcgcgcgaaacaccgcgcaccccggtgaagctcttcctcttc
gacgttctcgcgctcggcggacgcgacctggcgccccgcccgcttcgcgagcgtcgccgc
gcgttggagaagcttgcgaccgcggcatccgggccgctcgtactccctcccgtattcgac
gacgtcgatgcggcactcgcggccagtcgcagtctcggcctggagggcatcgtcgtgaaa
gaccccgcgtcgccgtaccgccgcggggagcgcacggagcagtggctcaaggtcaagctc
acgcgcacgcaggaggtcgtcatcggcggcgtccgtccgggcaaaggcgggcgcagcggc
acgatcggttcgcttctgctgggggtgcccggcgacgacggattgcactacgccggccgc
gtcgggtcgggcttcagcgaggccacgctcgcgcagctggaggctcggctgactccgctg
cgcaccgacgagaacccgttcgtcgacgtcccgcgccccgacgccagcgacgcactgtgg
gtgcggcccgacctggtgggcgaggtggagttcgccgagttcaccccgggcggcatcctg
cgtcacgcccgctggcggggcctgcggcccgacaagaccccggatgaggtggtcagggag
tcgtga

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