Microbacterium wangchenii: E4K62_11270
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Entry
E4K62_11270 CDS
T06490
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mwa
Microbacterium wangchenii
Brite
KEGG Orthology (KO) [BR:
mwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E4K62_11270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mwa03400
]
E4K62_11270
Enzymes [BR:
mwa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E4K62_11270
DNA repair and recombination proteins [BR:
mwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E4K62_11270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBR89208
UniProt:
A0A6D1IEH3
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All DBs
Position
2336340..2338925
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AA seq
861 aa
AA seq
DB search
MAAGEQTVRIEGRRLRITNLDKVLYPDTGTTKGEVIAYYTRIAPVLIPHVTGRPVTRKRW
PDGVGTADDPGMSFFAKDLEAGAPSWVQRRPIPHSSGPKDYPLVGDVPTLVYLAQVASLE
LHVPQWRFAPDGERGNPDRLVLDLDPGPGVGLAECAEVARQARAILSDMGMEPYPVTSGS
KGIHLYAPLPGEQSSDAITAFAKELARAIEADSPDLVVSQMAKSARPGKVFIDWSQNNGA
KTTIAPFSLRGRAHPTVAAPRTWEELDDPELRHLLFSEVLERVEASGDPMAALGFTAGAR
ATEDGPLGQYIAKRTAGATPEPVPANPAGAAASEGLPRFVIQEHHATRLHWDLRLERDGV
LASWAVPKGVPSTTARNNLAVQTEDHPMEYATFAGTIPAGQYGAGSMTIWDEGRYELEKW
RDDEVIFTLEGRPGGPLGRVRLALIRTDGSGEKSTWLLHRMKTDAAGHPQADGAPVVPTD
ADDAAPAPDHHAPAPAAEEDADPSAVDADDAGPSLSDPADAALSGPAHAGARIPPRAELR
PMLATTATPGIARQAARRWSGEDDAWVEAKWDGIRAIGVWDGQRLHLRARSGNDVTAKYP
ELTTVDLGLGPEPAVLDGEIVALDGQGRPSFPLLQTRMNLEKPREIARETPRTPVKLFLF
DVLALGGRDLAPRPLRERRRALEKLATAASGPLVLPPVFDDVDAALAASRSLGLEGIVVK
DPASPYRRGERTEQWLKVKLTRTQEVVIGGVRPGKGGRSGTIGSLLLGVPGDDGLHYAGR
VGSGFSEATLAQLEARLTPLRTDENPFVDVPRPDASDALWVRPDLVGEVEFAEFTPGGIL
RHARWRGLRPDKTPDEVVRES
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggtgaacagacggtgcgcatcgagggccggcgactgcgcatcaccaacctc
gacaaggtgctctaccccgacaccggcaccaccaagggcgaggtcatcgcttactacacc
cgcatcgcccccgtgctcatcccgcatgtgacgggtcgaccggtcacgcgaaagcgctgg
cccgatggcgtcggcacagcggatgaccccggcatgtcgttcttcgccaaggacctggag
gccggtgcgccgtcgtgggtgcagcgccgccccatcccgcactcctccggacccaaggac
tacccgctcgtgggagatgtgcccaccctcgtctacctcgcccaggtcgccagcctcgag
ctccacgtgccgcaatggcggttcgcccccgacggcgagcgcggaaaccccgaccgcctc
gtgctcgacctcgaccccggccccggtgtgggcctcgccgagtgcgccgaagtggcgcga
caggcgcgcgcgatcctctccgacatgggcatggagccctaccccgtcaccagcggcagc
aagggcatccacctgtacgcgccgctccccggcgagcagtccagtgatgccatcacggcg
ttcgcgaaggagctggcccgcgcgatcgaggccgactcccccgacctcgtcgtcagtcag
atggccaagtcggcccgcccgggcaaggtgttcatcgactggagccagaacaacggcgcc
aagacgaccatcgcgcccttctcgctgcgcggacgcgcccaccccaccgtcgcggcgcct
cgcacgtgggaggagctcgacgacccggagctgcgtcacctcctgttctccgaggtgctg
gagcgggtggaggcctccggcgacccgatggccgcgctggggttcaccgccggcgcgcgc
gcgacggaagacggcccgctgggtcagtacatcgccaagcgcaccgccggcgccacaccc
gagccggtgcccgcgaaccccgccggcgccgccgcatccgagggcctgccgcgcttcgtc
atccaggagcaccatgccacccggctgcactgggatctgcgcctggagcgcgacggggtg
ctggccagctgggccgtcccgaaaggcgtgccctccaccaccgcgcgcaacaacctggcg
gtccagaccgaagaccatcccatggagtacgcgacgttcgccggcacgatcccggcaggt
cagtacggcgcgggctccatgacgatctgggacgagggccggtacgagctggagaagtgg
cgcgacgacgaggtgatcttcaccctcgaggggcgcccgggaggtccgctcgggcgcgtg
cgcctcgccctcatccgcaccgacgggagcggtgagaagtcgacgtggctcctgcaccgc
atgaagacggatgcggcgggccatccgcaggccgacggggcgcccgtcgtccccaccgat
gccgacgacgccgcgcctgcacccgaccaccacgcgcccgcgccggcagcggaggaggac
gccgatccgtccgccgtcgacgcggacgacgccggcccgtccctctccgaccccgccgac
gccgccctctccggccccgcccacgccggcgccaggatcccgccgcgcgccgagctgcgc
ccgatgctcgccacgaccgcgacgccggggatcgcgcgccaggcggcgcggcgctggtcg
ggcgaggacgacgcgtgggtggaggcgaagtgggacggcatccgcgcgatcggagtgtgg
gacgggcagcggttgcacctgcgcgcccgcagcggcaacgacgtcaccgcgaaatacccc
gagctgacgaccgtcgacctggggctgggccccgaaccggcggtcctggacggcgagatc
gtcgccctggacgggcaggggcggccgagtttcccgctcctgcagacccggatgaacctg
gagaagccgcgcgagatcgcgcgcgaaacaccgcgcaccccggtgaagctcttcctcttc
gacgttctcgcgctcggcggacgcgacctggcgccccgcccgcttcgcgagcgtcgccgc
gcgttggagaagcttgcgaccgcggcatccgggccgctcgtactccctcccgtattcgac
gacgtcgatgcggcactcgcggccagtcgcagtctcggcctggagggcatcgtcgtgaaa
gaccccgcgtcgccgtaccgccgcggggagcgcacggagcagtggctcaaggtcaagctc
acgcgcacgcaggaggtcgtcatcggcggcgtccgtccgggcaaaggcgggcgcagcggc
acgatcggttcgcttctgctgggggtgcccggcgacgacggattgcactacgccggccgc
gtcgggtcgggcttcagcgaggccacgctcgcgcagctggaggctcggctgactccgctg
cgcaccgacgagaacccgttcgtcgacgtcccgcgccccgacgccagcgacgcactgtgg
gtgcggcccgacctggtgggcgaggtggagttcgccgagttcaccccgggcggcatcctg
cgtcacgcccgctggcggggcctgcggcccgacaagaccccggatgaggtggtcagggag
tcgtga
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