Methanothermobacter wolfeii: MWSIV6_0125
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Entry
MWSIV6_0125 CDS
T04587
Symbol
dnl1
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mwo
Methanothermobacter wolfeii
Pathway
mwo03030
DNA replication
mwo03410
Base excision repair
mwo03420
Nucleotide excision repair
mwo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mwo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MWSIV6_0125 (dnl1)
03410 Base excision repair
MWSIV6_0125 (dnl1)
03420 Nucleotide excision repair
MWSIV6_0125 (dnl1)
03430 Mismatch repair
MWSIV6_0125 (dnl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mwo03032
]
MWSIV6_0125 (dnl1)
03400 DNA repair and recombination proteins [BR:
mwo03400
]
MWSIV6_0125 (dnl1)
Enzymes [BR:
mwo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MWSIV6_0125 (dnl1)
6.5.1.6 DNA ligase (ATP or NAD+)
MWSIV6_0125 (dnl1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MWSIV6_0125 (dnl1)
DNA replication proteins [BR:
mwo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MWSIV6_0125 (dnl1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MWSIV6_0125 (dnl1)
DNA repair and recombination proteins [BR:
mwo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MWSIV6_0125 (dnl1)
NER (nucleotide excision repair)
Other NER factors
MWSIV6_0125 (dnl1)
MMR (mismatch excision repair)
Other MMR factors
MWSIV6_0125 (dnl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
SCM55729
LinkDB
All DBs
Position
I:123192..124853
Genome browser
AA seq
553 aa
AA seq
DB search
MLYMDLARVYKALESTTKRLEKTEILAELFRSVEGELLPAVTILMLGRVFPTWSSEELGV
GIKLLMKAISTVVGVSVEEIEDEIREQGDIGLASEKLFSRKAQTTFFSKPLTVELVYSKL
RALASISGERAQSRKIDILLEILSQAKPLEAKYITRTVLEELRVGVAEGIIRDAISGAFG
VDPALVERAHMLTNDLGMVALVARDEGEEGLKKLNLEPGRPVKPMLAQLADSIESAVQEL
GRAFCETKYDGVRVQIHRKSGEILIFTRRLENITLAVPDIVEMVEEALPDTDYIFEGEII
VKIDGRPASFQYILQRVRRKYDIDRLKVEVPLSLYVFDVLYHERPLIDEPLIKRRSILES
VISEIPGKVEASHMVDVGPDNVEDAVNLFNESIREGHEGIMIKDVMAPYIPGIRGKKMLK
FKAEPETLDLVVVGGTYGRGKRAHLVGSYLLAARDEDTGELMTVAHVATGLDDQTLQELS
DRMEELIIERKGRKLWVKPEIVLEVAYSEIVKSPEYESGYSLRFPVVKRIRDDLSPEDVD
TVSRIRSIFGESE
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgctctacatggaccttgcaagggtttataaagccctggaatcaacaacaaagcgcctt
gagaagacagagatcctcgcggaactcttcaggagtgttgaaggagaacttttacctgca
gtaaccatcctcatgctggggagggttttcccgacatggagctctgaagagctcggtgta
ggcataaagctcctcatgaaggcaatctccactgttgtgggtgtttcagttgaggagatc
gaggatgaaataagggaacagggagacataggccttgcaagtgaaaaactcttttcaaga
aaggcccagacaacatttttttcaaagccactaacggttgaactggtctacagtaaactg
agggccctcgcatccatatccggtgagagggcgcagtcaaggaagatagacatactcctt
gagatactctcacaggcaaagccccttgaggcaaagtacattacaaggactgttcttgag
gaactgagggttggagttgcagagggaataataagggatgccatatcaggggctttcggt
gttgaccctgccctggtggaaagggcccatatgctcaccaatgaccttggaatggttgcc
ctggttgcaagggatgaaggagaggagggccttaagaaacttaacctggagccagggaga
cctgttaaacccatgcttgcacagcttgcagatagcattgaatcagcggtccaggaactt
ggaagggccttctgtgaaacaaaatatgatggtgtgagggtacagatacacagaaaatca
ggcgaaatacttatattcacaaggagacttgagaatatcaccctggcggtccctgacatt
gttgagatggttgaggaggcactgccagacactgattacatctttgagggtgagataata
gtgaaaattgacggcagacctgcatccttccagtacatacttcagagggtccgccgtaag
tatgatatagacaggctgaaggttgaggttccactctcactgtacgtatttgacgtccta
taccatgaaagacccctcatcgatgagcccctgataaagaggaggagtatactggagtct
gttatctctgaaatccccggaaaggttgaggcaagccacatggttgatgtggggcctgat
aatgttgaagacgcggttaatctcttcaatgagtcaataagggagggccatgagggtata
atgataaaggacgttatggcaccctacataccgggtatacgcggcaaaaaaatgctgaaa
tttaaggcggaacccgagaccctggaccttgttgtggttggaggcacctatgggcgcggt
aaaagggctcaccttgtgggttcgtatctcctggcagcaagggatgaggataccggggag
ctaatgaccgtggcacatgttgcaaccggccttgatgatcagacccttcaggagctttca
gacaggatggaggagctgataattgagaggaagggccggaagctgtgggttaaaccggag
atagtactggaggttgcctacagtgagatcgtaaagagccctgaatatgagagcggatat
tcactgaggttccctgtagtgaagcgtataagggatgatctgagccctgaggacgttgat
acggtctcccgtatcaggtcaatttttggggagtctgaatga
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