Candidatus Mycobacterium wuenschmannii: PT015_13040
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Entry
PT015_13040 CDS
T09639
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mwu
Candidatus Mycobacterium wuenschmannii
Pathway
mwu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mwu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PT015_13040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mwu03400
]
PT015_13040
Enzymes [BR:
mwu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PT015_13040
DNA repair and recombination proteins [BR:
mwu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PT015_13040
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WIM85873
LinkDB
All DBs
Position
complement(2763195..2765417)
Genome browser
AA seq
740 aa
AA seq
DB search
MPPRVKLTNADKVLYPAAGTTKADVFDYYVRVSEFMVPHIAGRPATRKRWPNGVNQPSFF
EKQLAASAPEWLPRGSIAHKSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWRFGARDPGP
ATRLVFDLDPGDGATMAQLATVARAVRDLIADIGLTTFPLTSGSKGMHLYCPLDKPVSSR
GASVLAKRVAQQLETAMPKLVTSTMTKSVRAGKIFVDWSQNNGSKTTIAPYSLRGREYPT
VAAPRDWDELDDKKLRQLRYDEVLERVERDGDLLAGLDADVPDRLTKYRSMRDAGKTPEP
VPSAKPGSGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETTAVNHLAVHTED
HPLEYGSFEGTIPKGEYGGGTVTIWDAGTYDTEKFLENEVIVTLHGQRISGRYALIQTDG
NQWLAHRMKDQHVFDFDDLAPMLATHGSVAKLTAAQWAFEAKWDGYRLLVDADHGEVRLR
SRSGRDLTSEFPQLQSLASDLADHHVVLDGEVVALNESGVPSFSEMQNRARATRIEFRAF
DLLYLDGRSLLRAKYRDRRKMLETLASAGGLNVPELLLGDGAEALEYSRKQKWEGVIAKK
RDSTYQPGRRSASWVKDKYWNTQEVVIGGWRAGEGGRSSGIGSLLMGIPGDDGLQFAGRV
GTGFTERDLDNLKKTLKPLHTANSPFAAKLSTQDARGVTFVRPTLVGEVRYSEWTSDGRL
RQPSWRGLRPDKAPDEVVRE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcgggtcaagttgacgaacgccgacaaggtgttataccccgcagccggaaca
accaaggccgacgtattcgattattacgtgcgggtttccgagttcatggtgccccatatc
gcgggccggccggctacccggaaacgctggcctaacggcgttaaccaaccttctttcttc
gaaaagcagcttgccgcttcggctcccgagtggttgccgcgcggcagcatcgcgcacaag
tccggcacgaccacctatcccatcatcgacagcgtcgacggtctggcctggatcgcgcag
caagcggcgctggaagtgcatgtgccgcaatggcgtttcggtgcgcgcgaccccggaccg
gccacccggctggtgttcgacctcgacccgggcgacggggcgacgatggcgcaactcgcc
accgtcgcccgcgcggtccgcgatttgatcgccgacatcgggctgacgacgtttccgttg
accagcggcagcaaggggatgcacctctactgcccgctggacaagccggtgagcagccgc
ggtgcatcggtgttggcgaaacgggttgcgcagcaactggaaacggcgatgccgaaattg
gtcacctcgacgatgaccaagagcgtgcgcgccggcaagatcttcgtggactggagccag
aacaatggctcgaagaccacgatcgcgccgtactcgttacggggccgggagtatccgacc
gtcgcggccccgcgtgactgggatgagttggacgacaagaagttacgccagctgcgctac
gacgaggtgctcgagcgggtcgagcgcgacggagatctgttggcgggcttggatgccgac
gtgccggatcgactgaccaagtatcgaagcatgcgcgatgcgggcaagacaccggagccg
gtcccttccgccaaacccggttccggacagggcaacacgttcgtcatccaggagcatcac
gcccgccggctgcactacgacttccggctcgagcgcgacggcgtgctggtttcgtgggcg
gtaccgaagaatctgccggagaccacggccgtcaatcacctagccgtgcacaccgaagac
cacccgctggagtacggcagcttcgagggaacgattcccaagggggagtacggcggcggg
acggtgaccatctgggatgccggcacctacgacacggagaagttcctggagaacgaggtg
atcgtcacgctgcacggacagcgaatctcgggccgctacgcgctgattcagaccgacggc
aaccagtggctcgctcaccggatgaaagaccagcacgtcttcgacttcgacgaccttgcg
ccgatgctggccacccacggttcggtggcgaagctgaccgcggcgcagtgggcgttcgaa
gcgaagtgggacgggtaccggctgctggtagacgcggaccacggcgaggtccggctgcgt
tcgcgcagtgggcgggacctcaccagcgaattccctcaattgcagtcactggcaagcgat
ctcgccgatcaccacgtcgtgctcgacggggaggttgtcgcgttgaatgaatccggggtg
cccagcttctcggagatgcagaaccgggcccgcgccacccgcatcgagttccgcgcgttc
gacctgctgtacctggacgggcggtcactgctgcgggcgaagtaccgcgatcggcgaaag
atgttggaaacactcgcatctgccgggggcctcaacgtcccggaactgctgctcggcgac
ggcgccgaggcgctggagtattcgcgcaagcagaagtgggaaggcgtgatcgccaagaaa
cgggactccacctatcagccgggtcgccgctcggcatcgtgggtcaaggacaagtactgg
aacacccaggaggtcgtcatcggcggctggcgtgccggtgagggcgggcgcagcagcggt
atcggctcactgctgatgggcatcccgggcgacgacggcctgcagttcgccggccgggtc
ggcaccggtttcaccgaacgcgacctggacaacctgaaaaagaccctcaagccgctgcac
accgccaactcgccctttgctgcaaagctttccacccaggacgccaggggcgttacgttc
gttcggccgacgttggtcggcgaggtccgctacagcgagtggacgtcggacgggcggctg
cgtcagcccagctggagggggctgcgtccggacaaggcgcccgacgaggtggtccgggaa
tag
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integrated database retrieval system
