Mycobacterium xenopi: MYXE_12360
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Entry
MYXE_12360 CDS
T06649
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mxe
Mycobacterium xenopi
Pathway
mxe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mxe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYXE_12360 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mxe03400
]
MYXE_12360 (ligD)
Enzymes [BR:
mxe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYXE_12360 (ligD)
DNA repair and recombination proteins [BR:
mxe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYXE_12360 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
AlaDh_PNT_C
Motif
Other DBs
NCBI-ProteinID:
BBU21447
LinkDB
All DBs
Position
1263122..1265425
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AA seq
767 aa
AA seq
DB search
MDSPRAWPSEPTAQPRVKLTNADKVLYPPAGRRRKAVTKAEVFDYYTSIAEVMVPHVAGR
PATRKRWPNGVQAASFFEKQLASSAPDWLPRASVVHSSGTTTYPIIDTSTALAWIAQQAA
LEVHVPQWRFVAEWTRNGEELKPGPATRLVFDLDPGEGVTMRQLTDVARMIRDLIADIGL
TTFPVTSGSKGIHIYAPLDKPVSSRGAVVLAKRVAQQLEKAMPKLVTATMTKSLRAGKVF
VDWSQNNGSKTTIAPYSLRGRAQPTVAAPRAWEELDDPKLRQLRYDEVLQRVSRDGDLLA
PLDADINVDRLAKYRSMRNPSKTPEPVPNAKPAGGQNNTFVIQEHHARRLHYDFRLERDG
VLVSWAVPKNLPETTAVNHLAVHTEDHPLEYAMFEGTIPKGEYGAGKVIIWDTGTYDTEK
FRDDEVIVNLHGSRISGRYALIQTSGDQWLAHRMKEQKAFEFGELTPMLATEGSVAKLTA
GQWAFEGKWDGYRLLVEADHGGLRVRSRRGRDVTAEYPQLRALARDLADHHVVLDGEIVA
LDESGVPRFSEMQNRVRATRVEYWAFDLLYLDGRPLLRAKYRDRRRLLETLAGGRSLVVP
ELIPGDGAAALKYSSTHGWEGVVAKKLDSTYQPGRRSMSWIKDKHWRTQEVVIGGWRAGE
GGRTSGIGSLLMGIPADGGLHFAGRVGTGFTERELTRLKKTLAPLQTGESPFNASLPARD
AKGVTFVKPTLVGEVRYSEWTSDGRLRQPSWRGLRPDKEPHQVVREE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggattcgccgcgtgcttggccttctgagccgaccgcgcagccgcgggtgaagctgacc
aacgccgacaaggtgctctacccgcccgcgggccgcaggcgaaaagccgtcacgaaggcc
gaggtgttcgactactacaccagcatcgccgaggtgatggtgccacacgtcgccggacgc
cccgccacccgcaagcgttggcccaacggcgtgcaggcggcgtcgttcttcgaaaaacaa
ctggcctcgtcggcgcccgactggttgccccgcgcctcggtcgtgcactcgtccggaacc
accacctacccgatcatcgacaccagcaccgcgctggcctggatcgcccagcaggccgcg
ctggaggtgcacgtgccgcagtggcgcttcgtcgccgagtggacgcgcaacggcgaagag
ctaaagcccggcccggcaacgcgattggtgttcgaccttgacccaggtgaaggtgtgacg
atgcggcagctgaccgacgtagcacgcatgatcagggatttaatcgccgacatcgggctc
accaccttccccgtcaccagcggcagcaagggcatacacatctatgctccgctggacaag
ccggtgagcagcaggggcgcagtggtgttggccaaacgtgtggcccagcaactagagaag
gcgatgccgaagctggtcactgcgacgatgaccaagagcttgcgggcgggcaaggtgttc
gtcgactggagccagaacaacgggtcgaagacgacgatcgcaccgtattctctgcgtggc
cgggcacagccgaccgtggccgcgccgcgcgcctgggaagaactcgacgaccccaagctt
cggcaactgcgctacgacgaggtgctgcagcgggtgtcccgagacggtgacctgctggcg
ccccttgatgccgacatcaatgtggatcgactcgccaaataccgcagtatgcggaacccg
tcgaaaaccccagaaccggtgcccaacgctaaaccagctgggggacaaaacaatacgttc
gtcattcaagagcatcacgcccgtcggctgcactacgacttccggctcgagcgcgacggt
gtgctggtgtcgtgggcggttccgaaaaacctgcccgagaccacggcggtcaaccatctt
gcggtgcacaccgaggaccatcccttggagtacgccatgttcgaaggcaccatccccaaa
ggggagtatggggccggcaaggtgatcatctgggataccggcacctacgacaccgagaag
ttccgcgacgacgaggtcatcgttaacctgcacggcagccggatttccggccgctacgcg
ctgatccagacttccggcgaccaatggctggcacaccgcatgaaagagcagaaagccttc
gagttcggcgagctcacccccatgctggcgaccgagggctcggtggccaagttgacggcc
ggccagtgggcgttcgagggcaagtgggacgggtaccggctgctcgtcgaggccgaccac
ggcgggctgcgggtgcggtcgcgccgcggccgagacgtcaccgccgagtatccgcaattg
cgcgcgctggcccgcgatctcgccgaccaccacgtggtgctcgacggcgagatcgtggcc
ctcgacgaatctggggtcccgagattttccgagatgcaaaaccgggtgcgcgccacccgc
gtcgaatactgggcttttgatttgctctatctggacgggcgcccgctgctgcgggccaaa
taccgcgaccggcgccggctgctggaaaccttggccggcgggcggagtctcgttgtcccc
gaattgataccgggcgacggtgctgcggccctgaaatactcgagcactcacggctgggag
ggagtcgtcgccaagaaactcgactccacatatcagccgggccgccgttcgatgtcatgg
atcaaggacaagcattggcgcacacaagaagtggtgatcggcggctggcgtgccggcgag
ggtggccgcaccagtggcatcgggtcgctgctgatgggcatccccgccgacggtggcctg
cacttcgccggccgggtaggcactgggttcaccgaacgcgagctcacccgtctcaagaag
accctggcgcccctgcaaaccggcgaatccccgttcaacgcatcccttcccgctcgtgac
gccaagggtgtgacgttcgtgaagccaacgttggtcggcgaagtgcgctacagcgaatgg
acgtcggatggccggctgcgccaacctagctggcggggactgcggccggataaagagcca
caccaggtagtgcgagaggagtag
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