Mycobacterium xenopi: MYXE_13250
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Entry
MYXE_13250 CDS
T06649
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mxe
Mycobacterium xenopi
Pathway
mxe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mxe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYXE_13250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mxe03400
]
MYXE_13250 (mfd)
Enzymes [BR:
mxe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYXE_13250 (mfd)
DNA repair and recombination proteins [BR:
mxe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MYXE_13250 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBU21536
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All DBs
Position
1351559..1355239
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AA seq
1226 aa
AA seq
DB search
MTAPGFARPDTPIAGLVDLALSAPTFQQLIDRAADRPDELNLVGPASARVFVTSALARHG
PLLVVTATNRAADDLTAELRGVHGDAVALFPSWETLPHERLSPGVDTVGARLMVLRRLAH
PDDAWLGPPLRVVVTSARSLLQPMTPRLGDIEPLTLAVGDEVAFEEVITRLVELAYTRAD
MVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVTEMRMFSVADQRSIPELTVTTLVAV
ACRELLLSDDVRERAARLAGKHPAAEHAIVGSFTDMLAKLAEGIPVDGMEALLPVLRPDE
LTLLTDQLAEGTPVLVCDPEKVRARAADLIKSGREFLEASWSVAGFGGSQENRAPVDVEQ
LGGSGFVEFDEVRAAARKTGHPWWTLSQLSDESAIELELRAAPSARGHQRDIDEIFAMLR
AHVSTGGCAAVVAPGTGTAQRVVERLTESDTPATLLESGATPKPGVVGVLKGPLHDGVVV
PGANLVVITETDLTGNRVNATDGKRLAAKRRNVVDPLALTPGDLVVHDQHGIGRFVEMTE
RTVGGARREYLVLEYASSRRGQNDTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANT
KTKARRAVREIAGELVALYAKRQATRGHAFGPDTPWQAEMEDAFGFTETVDQLTAITEVK
ADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTERM
SEFPVTIKGLSRFTGPAESRAVLDGMADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEHR
FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRLPVLTYVGPH
DDKQIAAALRRELLRDGQAFYVHNRVSSIEQAAARVRELVPEARVVVAHGQMNEDVLERT
VQGFWNREYDILVCTTVVEAGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY
FLYPPHAPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFD
LYVRLVGEAVEAYRAAADGKTVTTAEEPKDVRIDLPVDAHLPADYIASDRLRLEAYRRLA
AASSDDEVAAVVEELTDRYGALPEPAQRLVAVARLRLLCRRYGVTEVSAPSEATVRLSPM
TLPDSAQVRLVRLHPGARYRATTSTVQVPIPRAGGVGAPRIRDLELVQMVADLLSALDGK
PQAEIGITKPGPTNGAAAVSEERQAR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggtttgcccgaccagataccccgatcgcggggctcgtcgacctggcg
ctgagcgcgccgacctttcagcaactcatcgaccgggcagccgatcgacccgacgaattg
aacctggtcggtccggccagcgcacgtgtcttcgtcaccagcgccctggcccggcacggc
ccgttgctggtggtcaccgccaccaaccgggcagccgacgatctgaccgccgagctgcgt
ggtgtgcacggcgacgcggtcgcgttgttcccgtcctgggaaaccctgccacacgaacgg
ctctcgccaggtgtcgacaccgtgggcgcccgcctcatggtgctgcgtcggctggcccac
cccgacgacgcgtggctgggaccgccgctgcgggtggtggtgacgtcggcgcgctcgctt
ttgcagccgatgacaccgcgactgggcgacatcgagccgctcaccctggctgtcggcgac
gaggtcgcgttcgaagaggtgatcacccggctggtcgaattggcctacacccgggccgac
atggtcggtcggcgcggggagttcgcggtgcgcgggggaatactcgacgtgtttccgccg
accgccgaacacccggtgcgcatcgagttctggggcgacgaggtcaccgagatgcgcatg
ttctcggtcgccgatcagcgctccatccccgagctgaccgtgaccaccctggtcgccgtg
gcctgccgggagctgttgctgagcgacgacgtgcgggaacgggccgccaggctggctggt
aaacatcccgccgccgagcatgcgatcgtcggcagcttcaccgacatgctggccaagctg
gccgagggcatccccgtcgacggcatggaggcgctgctgcccgtcttgcgtcccgacgag
ctgacgctgctgaccgaccaactggccgagggcaccccggtgctggtctgcgatccggaa
aaggtccgcgcccgcgccgccgatctgatcaagagcggccgggagttcctcgaggcgtcg
tggtcggtagctggcttcggcggtagccaggaaaaccgagccccggtcgacgtcgaacag
ctcggcgggtccggcttcgtcgaattcgacgaggtccgcgccgccgctcgcaagaccggt
cacccgtggtggacgctgagccagctctccgacgagtcggcgatcgaactcgagctgcgg
gccgcgccgtcagcgcgcggccatcagcgcgacatcgacgagatcttcgcgatgctgcgc
gcgcacgtgtccaccggcgggtgcgccgcggtcgtcgcacccggcaccggcaccgcgcag
cgcgtggtcgagcggttgaccgaatccgacactcccgcaacgttattggagtccggagcg
acgcccaaacctggcgtggtcggggtgctcaaaggtccgctgcacgacggcgtggtggtt
ccgggcgccaatctcgtggtgatcaccgagaccgacctaaccggcaaccgggtgaacgcc
accgacggcaagcggttggcggccaaacgccgcaacgtcgtcgacccgctggcgctcacg
cccggcgacctggtggtgcacgaccagcacggcatcggccggttcgtggagatgaccgaa
cgcaccgtgggcggggcacgacgcgaatatctggtgctggagtacgcgtcgagtcggcgg
ggccaaaacgacaccgacaagctctacgtgccgatggactcgctggatcagctgtcgcgc
tacgtcggtgggcaagctccggctttaagcaggctcggcggcagcgactgggccaacacc
aagaccaaggcgcgccgcgcggtgcgtgagatcgccggtgagctcgtggcgctctacgcc
aagcggcaggccacccgcgggcacgcgttcgggccggatacgccgtggcaagccgaaatg
gaggacgcgttcgggttcaccgagaccgtcgatcagctcaccgcgatcaccgaagtcaaa
gccgacatggaaaagcccgtcccgatggaccgggtgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtgcgggcagcgttcaaggcggtgcaggacggcaagcaggtcgcg
gtgctggtgcccaccacgctgctggccgaccagcatctgcagaccttcaccgaacgaatg
tcggagttcccggtcaccatcaaggggctctcacggttcaccgggccggccgagtcgcgc
gccgtgctcgacggcatggccgacggcagtgtcgacatcgtgatcggcacgcaccggctg
ctgcagaccggggtgcggtggaaggacctcgggctggtcgtcgttgacgaggagcaccgc
ttcggcgtcgaacacaaggagcacatcaagagcctgcgcacccatgtcgacgtgctgacc
atgagcgccacccccatcccgcggacactggagatgagcctggcggggatcagggagatg
tcgacgatcctcaccccgcccgaagaccgtcttccggtgctgacctacgtcgggccgcat
gacgacaagcagatcgcggccgcgttacggcgcgagttgctgcgcgacggtcaggccttc
tacgtgcacaaccgggtcagctcgatcgaacaggcggccgcgcgggtgcgtgagctggtg
cccgaggcgcgggtcgtcgtcgcgcacggccagatgaacgaggacgtgctggaacgcacc
gtccagggattctggaaccgggaatacgacatcctggtgtgcaccacggtcgtcgaggcg
ggcctggacatctccaacgccaacaccttgatcgtcgagcgcgccgacacgttcgggttg
tcccagctgcatcagctgcgcggccgggtcgggcgaagccgggaacgcgggtacgcctat
ttcctgtatccgccgcacgctccgcttaccgagaccgcctacgaccggcttgccacgatc
gcgcaaaacaacgagttgggcgcgggcatggcggtggccatgaaagacctggagatccgc
ggtgccggcaacgtgttgggggtggaacagtccggccacgtcgccggcgtgggattcgac
ctgtacgtgcggctggtgggcgaggcggtcgaggcctatcgggcggccgccgacggcaaa
accgtcacgaccgccgaggagcccaaggacgtgcgcatcgacctgccggtggacgcgcac
ctgccagcggactacatcgccagcgaccggctacgcctggaggcctatcggcggcttgcc
gccgcgtcgtccgacgacgaggtcgccgccgttgtcgaggaactcaccgaccgctacggc
gccctcccggaaccggctcagcggctggtggccgtcgcccggctgcgtttgctgtgccgt
cgatacggcgtcaccgaagtgtccgcgccgtcggaggcgacggtgcggctatcgcccatg
accctgccggactccgcgcaggtgcgcctggtgcggctgcatccgggcgcgcgctaccgc
gccaccacctcgaccgtgcaggtgccgattccacgcgccggcggtgtgggcgcgccgcga
attcgtgacctcgaattggtgcagatggtggccgatctgctatccgcgctcgatggaaag
ccgcaggcagaaattggtataacgaaacccgggcccacgaacggagccgcggcggtgagt
gaggagcgacaagcgcgatga
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