Mycetocola zhujimingii: C3E77_07890
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Entry
C3E77_07890 CDS
T05409
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
myl
Mycetocola zhujimingii
Pathway
myl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
myl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C3E77_07890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myl03400
]
C3E77_07890
Enzymes [BR:
myl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C3E77_07890
DNA repair and recombination proteins [BR:
myl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C3E77_07890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWB86543
LinkDB
All DBs
Position
1667117..1669618
Genome browser
AA seq
833 aa
AA seq
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MAKSGSRQTVDVDGRRITLTNLDKVLYPETGTTKADVLRYYAEIADVMVPYTAGRPATRK
RWVHGVGTPDKPGEVFYQKNLDDSTPEWVARRSIEHSSRNNDYPLVNDRATLAWLAQIAA
LEIHVPQWQFERTGGARNPDRLVLDLDPGEGLTLADCAAVAFLARDILSDMGLNPLPVTS
GSKGIHLYAALDGSLPSDTVSSVAHELARALEADHPDLIVSDMKKSLRVGKVLIDWSQNN
SAKTTIAPYSLRGRFTPTVAAPRSWEELESPTLAQLDFEEVLERVARDGDLLAPLASART
GGLEPTPDHMARFESTAEATDRLAKYRSMRDGTKTPEPVPEAVAALTSGNSFVIQEHHAR
RLHYDFRLEHDGVLVSWAVPKGPPLTSDENHLAVQTEDHPLEYGTFEGRIPKGEYGAGEV
TIWDSGTFELEKWREDKEVIVTLSGQDDGGLGGVPRKYALIHTKRPGAENNWLIHLMDPA
AKKSGSGHAPTRERAPDPAPAAPERRSSITAPATPLGREIIRPMLAANGNASDIDDEHEW
AFEMKWDGYRAVVYIDGGAVRLLSRNGNDLTDTFPELAGPLGKAIGATSAVLDGEIVAMD
KTGRPNFHLLQSRAGLSDDEAAARTANIELMLFDLLELEGHDITGEEYDVRRAALDRTVT
PTGPVQVPPEFDGDVEAAIASSLELGLEGIVAKERDSPYLPGKRSRSWIKVKHAKTQEVI
VVGWRPGAGSAANAVGSLVLGIPDADGIRYAGRVGTGFTDKDRRSFLKKFASMGVDSPPV
HDAPSDELTHAKWIRPELVGEVTFLQWTSTGALRHSSWRGWRPDKSPEDVVVE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagtcaggctcccgccagaccgtcgacgtcgatggccggcgaattacactcacc
aacctggacaaggtgctctaccccgagaccgggacgaccaaggcagacgttctgcgctac
tacgccgagatcgccgatgtcatggtgccgtacacggcgggccgacccgcaacgcgcaag
cgctgggtccacggcgtcggcacccccgacaagccgggcgaggtgttctatcagaagaac
ctcgacgactcgacgccggagtgggttgcgcgccgctcgatcgagcacagcagcaggaac
aatgactatccgctcgtcaacgacagggcgacgctggcctggctcgcgcaaatcgcagcc
ctcgagattcacgtaccgcagtggcagttcgagcgcaccggtggcgcacgcaaccccgac
cgcctggtgctcgacctggacccgggcgagggtctcaccctggcggactgtgcggctgtc
gccttcctcgcgcgggacatcctctccgatatggggttgaatcccctgccggtgaccagc
ggcagcaagggaattcacctctacgcggcgctcgacggctcactgccgagcgacaccgtg
tcgagtgttgcgcacgaactggcgcgggcgctcgaagcggatcatccggatctcatcgtg
agcgacatgaagaagtcgcttcgcgtcggtaaagtgctcatcgactggagccagaacaac
agcgccaagaccacgatcgcaccctattcgctcagggggcggttcactccgacggtggcg
gcaccacgttcgtgggaggaactggagtccccgacgctcgcgcaactcgattttgaggag
gttctcgagcgtgtcgctcgcgacggtgaccttctcgcaccgctggcatccgcccgcacc
ggcggacttgagccgacaccggatcacatggcgcggttcgagagcacggcggaggccacg
gaccggctggccaagtaccgcagcatgcgcgacgggacgaaaacccccgaaccggtgccc
gaagcggtcgccgcgctgacctcgggcaactcgttcgtcatccaggagcatcacgcccgc
cgcctgcactacgactttcggctcgagcacgacggagtcctcgtgtcgtgggctgtgccg
aagggcccgccgctcacgagcgacgagaatcacctggcggttcagaccgaagaccacccg
ctcgagtacggaacgttcgaggggcgcatccccaagggggagtacggtgctggcgaggtc
accatctgggactcgggcacattcgaactggagaagtggcgagaagacaaggaagtcatc
gtgacactctccggtcaggacgacggcgggctcggaggggtcccgcgcaagtacgcgctg
attcacaccaaacgcccgggtgccgagaacaactggctcatccacctcatggacccggcg
gcaaagaaaagcgggagtgggcacgcgccgacgcgggaacgggctcccgacccagcaccg
gcagcgccagagcgccgctcgtcgatcaccgcgcccgcaaccccgcttgggcgcgagatc
atccgcccgatgctcgccgccaacgggaacgcgtccgacatcgacgatgagcacgaatgg
gcattcgagatgaagtgggacggttatcgtgccgtcgtgtacatcgacggcggcgccgtt
cgcctcctgagccgcaacggcaacgacctcaccgacacgttccccgaacttgccggcccg
ctcggcaaagccatcggtgcgacctctgctgtactcgacggcgaaatcgtcgcgatggac
aagacgggcaggccgaacttccacctcctgcagtcgcgcgccgggctgagtgacgacgag
gccgcggctcgaactgcgaacatcgagctcatgctcttcgacctgctcgaactcgagggc
cacgacatcaccggcgaggagtatgacgtgcgacgcgctgccctcgacaggacggtgacc
ccgaccgggccggtgcaggtgccaccggagttcgacggtgacgtcgaggcagcgatcgcg
tcgagcctcgaactcggccttgagggcatcgtcgcgaaggaacgcgacagcccgtacctc
cccggtaagaggtcgaggtcatggatcaaggtcaagcacgcgaagacgcaggaagtaatc
gtcgtcggctggcgcccgggtgcgggcagcgcggcaaacgccgtcggttcgctcgtgctc
gggattcccgacgccgacggcatccgctatgccggccgggtaggcacaggattcaccgac
aaagaccggcgatccttcctgaagaagttcgcatcgatgggcgtcgactccccaccggtg
cacgatgcgccgagcgacgaactgacgcacgcgaagtggatccggcccgaactcgtcggc
gaggtcacattcctccagtggacatcgacgggagcactgcgccattcgtcgtggcgtggc
tggcggccggacaagtcgccggaagacgtggtcgtcgagtaa
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