Myroides sp. A21: MYRA21_1294
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Entry
MYRA21_1294 CDS
T03521
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
myr
Myroides sp. A21
Pathway
myr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
myr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYRA21_1294 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myr03400
]
MYRA21_1294 (mfd)
Enzymes [BR:
myr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYRA21_1294 (mfd)
DNA repair and recombination proteins [BR:
myr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MYRA21_1294 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AJA68454
LinkDB
All DBs
Position
complement(1383961..1387323)
Genome browser
AA seq
1120 aa
AA seq
DB search
MDIKQRFQESSKTKQLLQDLQSRGNKIYLKGLIGSAISFQIEALFREADAPFLLIFNDKE
EAAYYLNDLETLVNKTDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRISSRKKPAIIVS
YTEAIFEKVVTKKVLEKNTLKVHQGDKLSIDYINEVLFEYNFKRVDFVAEPGEFSVRGGI
IDVFSFSNDTPYRIEFFGDEIDSIRTFDVETQLSVDKQKKITIIPNVENKFSAEVRESFL
DYISEKTIVLTQHTAMTVEQLDRQFDRAVDTFSKLNKDLKHKEPKDMFLDGQSFLHKLEL
FTLLELNDTKLMDVNKTVEFHIKPQPSFNKQFDLLARNLNDNTDNGFYNYLFCSNENQAK
RFKDIFESLKEDDNHKVVQSFKTIVMPIFEGFIDEEKQIVCYTDHQIFERYHKFSIKNGY
TKKQTITLKELNSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYVSI
HSLHKISKYNGKDGAVPKIHKLGSAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQC
APDSYLQHELESSFIYEDTPDQLKATQEVKADMEQERPMDRLVCGDVGFGKTEVAIRAAF
KMVDNGKQVAILVPTTILAFQHYQTFTERLKDMPVRVSYINRFRTAKQKAEILKDLEAGK
IDILIGTHQLVNKGIVFKDLGLLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTL
QFSLMAARDLSVISTPPPNRYPIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIR
EVAGMIQRLVPDAKVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTI
LINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGL
NIAMKDLEIRGAGDILGGEQSGFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEEN
KVFVKDTQIDTDFEILFPDEYINNITERLNLYNELSLITNEEVLQQYEQRLIDRFGALPR
QAIALLNSLRIKWHAANMGIEKIVMKQGKMICYFLGDQQSDFYQSAKFRKVLIFIQHRSN
ICEMKEKQTKNGLRLLLTFKNIKSIKQGLEYIELLDSAEA
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaacaacgctttcaagagtcttcaaaaacaaaacaactcctccaagaccta
caatctagaggtaataaaatatatctaaaaggattaataggctcggctatctcatttcag
atagaagccttattccgagaagctgatgctccttttttattaatattcaatgataaagaa
gaggctgcttattacctaaatgatttagaaacactagtcaataaaaccgatgttctcttc
tacccaggttcttatagaagaccgtatcagatagaagagacagataatgctaatgtacta
ctacgtgcagaggtattgaatagaattagttctcgtaaaaagcctgctatcattgtttcg
tatacagaggctatcttcgaaaaagtggttactaaaaaggtattagaaaagaatacactt
aaagtacatcaaggagataaactctctatagactacatcaatgaggtattgtttgaatac
aattttaaacgagttgatttcgtagctgagccgggagagttctctgtaagaggaggaatt
atagatgtattctctttctctaatgacaccccgtaccgtatagagttcttcggagacgaa
atagatagtatccgtaccttcgacgtagaaacgcagttatctgtagataaacaaaagaaa
atcactatcattcccaacgtagagaacaagttctctgcagaggtaagagagagtttctta
gactatatctctgagaagactattgtactaacgcagcatactgctatgacagtagaacag
ctagaccgtcagttcgatagagctgtagataccttctctaaacttaataaagatttaaag
cacaaggaaccaaaagatatgttcttagacggacaatctttcttacataagctagagcta
tttacgctactggagctgaatgataccaaactgatggatgtcaataagaccgttgagttt
cacatcaaacctcagccttcgtttaacaaacagtttgacttactggctcgtaacctgaat
gacaatacagacaatgggttctataactacctattctgctctaatgagaatcaggctaag
cgcttcaaagatatatttgagtctcttaaagaagatgataatcacaaagtagtacaatca
ttcaagacaatcgtgatgccaatcttcgaaggatttatcgatgaggagaagcaaatcgtc
tgctatactgaccaccaaatcttcgaacgctatcacaagtttagtatcaagaatgggtat
actaagaagcaaacgatcacactaaaagagctaaactctctttcggtaggtgattatgta
acacatatagatcatggtatcggtaagttcggagggttacaaaaaatacaagtagaagga
aaaacacaagaggctatcaagctagtatatgctgataatgatatcgtctatgtaagtatt
cactctctacacaaaatatcaaaatacaatggtaaagacggggctgtacctaagatccat
aaattaggttcggctgcatggaaaaccttgaagaataaaacaaaggctcgtgttaagcac
attgcctttaaccttattcaactatatgcaaaacgccgtttgcagaaaggattccaatgt
gctcctgatagctatttacagcatgagctagagagttcgtttatctatgaagacactcca
gatcagctaaaagcgacacaagaggtaaaggcggatatggaacaagaaagaccaatggat
cgcttggtatgtggggatgtaggttttggaaaaactgaagtagctattagagctgccttt
aaaatggttgataatggcaaacaagtcgcaatactagtccctacgactatcctagccttt
caacattatcagacattcacagagcgtctgaaggatatgcctgtacgtgtgtcttatatc
aatagatttagaactgctaaacaaaaagcagaaatactaaaagacctagaagctggtaaa
atagacatccttatcggtacacatcagttagtgaataaaggcattgtgtttaaagatcta
ggattattaattatagatgaagaacaaaagttcggagtagctgtaaaagataagttgaaa
acgatatcagagaatgtagatacacttacacttactgctacacctattccacgtacacta
cagttctctctgatggctgcacgtgacttatctgtgataagtactcctccaccgaataga
tatcctatcgaaacaaatgtagtaggatttaatgaagaggtgattagagatgctgtgtct
tatgaaatagaaagaggtggtcaagtgtacttcatcaataatcgtatagagaatattaga
gaagtagcgggtatgatacaacgtctagtacctgatgctaaagtaggtatcggccatggt
cagatggatggtaaaaagttagaagaactgatgctcgcgtttatgaatggggagttcgat
gtactcgttgctactaccattatcgagagtggattagatgttcctaatgccaatacaata
ctgattaataatgcaaacaacttcgggctatctgacttacatcagatgagaggtcgtgta
ggacgaagtaataaaaaagcgttctgttacttcatctgtcctccttattctgctatgaca
gaagaagcgagaaagagaatacaggcactagagcagtttagtgacctggggagtggtcta
aacatcgctatgaaagacttagagatcagaggggcaggtgatatcttaggaggtgaacag
agtggtttcatcaatgaaataggattcgaaacgtatcaaaagatcatgcaagaggctatc
gaagagcttaaggcaaacgagtttaaagacctatacgaagaagagaataaagaagagaac
aaggtattcgtaaaagatactcagatagatactgacttcgagatattgttccctgatgag
tatatcaataatatcacagagcgactaaacctgtataacgaactgagcttaataacgaat
gaagaagtcttgcagcagtatgaacagcgattaatagaccgattcggtgcactgccacgt
caggctattgctttattaaatagcttgcgaatcaaatggcatgctgctaatatgggaata
gaaaagatcgtgatgaaacaaggaaagatgatttgttacttcttaggggatcaacagtca
gacttctatcaatctgccaaatttagaaaggtattaatcttcatacaacaccgttctaat
atctgtgagatgaaagagaagcagacaaagaatggactgagattattgctaacattcaaa
aatataaagtctatcaaacaagggttagaatacattgaacttttagattcagctgaagct
taa
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