Mycobacterium sp. VKM Ac-1817D: G155_06665
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Entry
G155_06665 CDS
T03634
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
myv
Mycobacterium sp. VKM Ac-1817D
Pathway
myv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
myv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G155_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myv03400
]
G155_06665
Enzymes [BR:
myv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G155_06665
DNA repair and recombination proteins [BR:
myv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G155_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
AIY45298
LinkDB
All DBs
Position
1426736..1429012
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AA seq
758 aa
AA seq
DB search
MERYERVRLTNPDKVLYPASSTTKAEVFDYYLSIAEVMLPHIAGRPVTRKRWPNGVAEAS
FFEKQLASSAPDWLERGTIVHKSGTTTYPIVNTREGLAWIAQQASLEVHVPQWRFSSDGS
QGPATRIVFDLDPGEGVTMPQLCQVAQAVRELMSDIGLMTYPLTSGSKGLHLYVPLADPI
SSRGASVLAKRVAVQLEQAMPKLVTATMTRSLRAQKVFLDWSQNNAAKTTIAPYSLRGRD
YPTVAAPRTWDEIGDPDLRHLRFDEVLQRISDDGDLLAGLDDDAPVADKLTTYRSMRDAT
KTPEPVPRDIPVTGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDTTAVNHLA
VHTEDHPIEYLTFHGAIPKGEYGAGNMVIWDTGTYEAEKFRVPADPDDSDAPKGEVIFTL
NGNRIDGRYALIQTEGKNWLAHRMKDQSSAAPEPKDFAPMLATEGSVDKLKATQWAFEGK
WDGYRLLVEAEHGRLQLRSRRGRDVTAEYPQFEALAADLADHHVVLDGEAVALDDHGMPS
FREMQNRARSTRVEFWAFDILWLDGRSLLRAKYTDRRKLLEALAAGGGLIVPEQLAGDGP
EAMEHAREHKFEGVVAKKRDSTYQPGRRSASWIKDKIWNTQEVVIGGWRQGEGGRSSGIG
ALVLGVPGPHGLQFAGRVGTGFTEKELTKLKGMLKPLHTKESPFDKPLPKLDAKGVTFVR
PELVGEVRYSERTTDHRLRQPSWRGLRPDKAPDEVVWE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtatgaacgggttcggctgacgaaccccgacaaggtgctctaccccgcatcg
agcaccaccaaggccgaggtgttcgactactacctcagcatcgccgaggtgatgctgcct
cacatcgcgggccgcccggtgacccgaaagcgctggccgaacggggttgcggaggcgtcg
ttcttcgaaaagcagctggcgtcgtcggccccggactggcttgagcgcggcactatcgtg
cacaagtccggcaccaccacgtacccgatcgtcaacacccgcgagggcctggcctggatc
gcgcagcaggcctcgctggaagtgcatgtgccgcaatggcgattctcatctgacggcagt
caaggcccggccacccgcatcgtgttcgacctcgatccgggcgaaggcgtcaccatgccc
cagctgtgccaggtcgcccaggctgtgcgtgaactgatgagcgatatcggcctgatgacc
tacccgctcaccagcggcagcaaggggctgcacctgtatgttccactggccgatccgatc
agctcccgcggcgcctcggtgctggccaagcgggtcgccgtgcaactcgaacaggcgatg
cccaaactcgtcaccgccaccatgactcgcagcctgcgcgcgcagaaggtgttcctggac
tggagtcagaacaacgcggccaagaccaccatcgccccgtactcgctacgtggccgcgac
tacccgaccgtcgccgcaccccgcacctgggatgagatcggagacccggatctgcgccat
ctgcgtttcgacgaagtgttgcagcggatttccgacgacggcgacctgctggccggcctg
gacgatgatgcaccggtagccgacaagctcaccacctaccggagcatgcgcgatgccacc
aagacccccgaacccgtgccccgtgacatcccggtgacggggaacaacgaccggttcgtc
atccaggagcaccatgcgcgacgcctgcactacgacctgcggctggaacgcgatggcgta
ctggtgagttgggctgttcccaagaacctgcccgataccacggcagtgaatcaccttgcc
gtgcacaccgaagaccacccgatcgagtacctgacattccacggcgccatcccgaaggga
gagtacggcgccgggaacatggtcatctgggacaccggcacctacgaagcggagaagttc
cgtgtcccagccgatcccgacgattccgatgcgcccaagggcgaagtcatcttcaccctc
aacggcaaccgcatagacggccgctatgcactgatccagaccgagggcaagaactggttg
gcgcaccggatgaaggaccagtcctcggccgcacccgagcccaaggatttcgcgcccatg
ctcgccaccgagggatcggtggacaagctcaaggccacgcaatgggcgttcgagggcaaa
tgggacggttaccgactgctggtcgaggccgagcacggacggctgcaactgcgttcgcgc
cgcgggcgcgatgtgaccgccgaatacccccaattcgaagcgctggccgccgatctcgcc
gaccaccacgtggtgctcgacggcgaggcggtggcactcgatgaccatgggatgccgagt
ttccgcgagatgcagaatcgggcccgctccacgcgggtcgagttctgggcgttcgacatc
ctgtggctcgacggccggtcattgttgcgtgccaagtacaccgatcggcgaaagttgttg
gaggcgttggccgccggtggcggcctgatcgtgcccgagcagttggccggtgacggcccc
gaggccatggagcatgcccgcgagcacaagttcgagggcgtcgtcgcgaaaaaacgggac
tcgacgtatcaacccggccggcggtcagcgtcctggatcaaggacaagatctggaacacc
caggaagtggtgatcggcggctggcgccagggagaaggtgggcgcagcagcggcatcggt
gcactggtgttgggggttccgggcccccacgggctgcagttcgccgggcgggtcggcacc
gggttcaccgagaaagagctgaccaagctcaagggcatgctgaagcccctgcataccaag
gaatcgcccttcgacaagccattgccgaagctcgacgccaaaggggtcacgttcgtccgg
cccgagctggtgggagaggttcgctacagcgaacgcaccaccgaccatcgactgcgccag
cccagctggcgcggcctgcggccggacaaagcgcccgacgaggtggtgtgggagtga
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