Maylandia zebra (zebra mbuna): 101465742
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Entry
101465742 CDS
T02814
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101465742 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mze03400
]
101465742 (lig4)
Enzymes [BR:
mze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101465742 (lig4)
DNA repair and recombination proteins [BR:
mze03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101465742 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101465742
NCBI-ProteinID:
XP_004573334
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All DBs
Position
LG23:30608488..30617207
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AA seq
910 aa
AA seq
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MDSTSKTDASSQLSVASQVPFLHLCTTLEKIQKSKLRPEKSKILGYFVEKWREFHSALHK
DNSKTTDSFYPAMRLIVPPFERERVAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVATSNATKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPAVSL
SEVSIGLFSAFKPMLAAVANIRNVEKQMGNSTFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAYNPAADTFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLINDQKLGKETLKKRHEILQTVFTPAKGRLHLVPKAEARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPEPGEKPSVFHTLCRIGSGYTMKELYDLGLKLTKHWKVYRKNNPP
ASILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWYQCMT
LAELDQFRSKASGKLASRHLHIDNDEPQKKKRKLPVKPKKVIGVIDQFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKSELEKGVARCGGFVVQNPGRDTYCVVAGVENMRVKNLISSN
QHDIVWATWLLECLDQKVVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFNRISSADAANEVNVTQVEGRYGWDDLPTSMFRPFTAYMDRFADIGDPKSAIPATCLDT
RALEFRYHGGKVVEELEEGVSHVIIAEATRLLDLRTLRRCFRRKFKIVKETWVTDSIKAG
HVMNDTEYLA
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggacagcacttccaaaactgatgcttccagtcagttatctgttgcttctcaggttcct
ttccttcacttgtgtaccacattagaaaaaattcaaaagtccaaactccgtccagagaaa
tccaagatccttgggtacttcgttgagaaatggcgggaatttcattctgccctccacaaa
gacaactccaaaactacagactctttctatcctgccatgcgcctcatagtcccgcctttt
gaacgagagcgagtggcatatggcatcaaagagagcatgctggctaaactctacattgat
gtattaggcctcccaaagaatggccctgaggctaataagctgttgaattaccgtgcaccg
accacgtcccaaggagaagctggagactttgctggcatggcgtattttgtgctgaagaaa
cgatgcaccagccaaggaaatctcagtattaaagaggtcaacgacttcctggattcagta
gccaccagcaatgccaccaagcagaaagatcttgtcaaaaagagtctgctgcacctcatc
acccagagctcagctcttgagcaaaagtggctcattagaatgattctgaaggacatgaag
ctcgggatcagcaaagaaaccgttctccaagttttccacccagatgctgctgagctctac
aacgtcaacacagacttgaacaaggtgtgccagcagttacacaatccagccgtgtcctta
agtgaagtctctattggacttttttctgctttcaaacctatgctggcagctgtggctaac
atccgcaacgtggagaaacagatgggaaacagcactttttacattgagacaaagctggat
ggagagcgcattcagctgcacaaagatggggatgtgtacaagtacttcagccgaaatgct
tttgagtacacgcagcagtttggaggatccccgttggaaggatcactgacgccttatatc
cacaatgtttttaaaagcaatgtggtgaactgcattcttgatggtgagatgatggcatac
aacccggcagcagacaccttcatgcagaaagggagcaaatttgacatcaagaggctgatg
gatgactcagagttgcagacatgcttctgtgtgtttgacgtgcttttaataaatgatcag
aagttaggcaaagaaactctcaagaagcgacatgagattcttcagacagttttcactcca
gccaagggaaggctgcatctggtgccaaaggctgaagccagaaccatgcaggaggtggtg
aatgctcttaacgatgctattgacagcagagaagaggggatcatggtgaaggatccttta
tccatctacaaacctgacaagcgaggggaaggctggctgaagataaaaccagaatatgtg
gatggcttgatggatgagcttgacctgctgattgttggtggctactggggaaaagggaga
aggggtggcatgatgtcccatttcttatgtgctgtggccgaagctccagagcctggcgag
aaaccttcagttttccataccctttgccgcattggctccggctacaccatgaaagaattg
tatgaccttggtttaaagctcaccaaacactggaaggtctaccggaaaaacaacccacca
gcatccatcctgtgtggaacagagaaaccggaagtctacattgaaccctgcaactccgtt
atcatccaggttaaagcggctgagatagtcggaagcgacatgtataaaaccaactgtact
ctgcgcttccccaggattgagaagattcgagatgacaaagaatggtaccagtgcatgaca
ctggcagagctggatcagttccgcagcaaggcgtctgggaaacttgcctctcggcacctt
cacattgacaacgatgaaccgcaaaagaagaagcgcaagctcccagtcaaacccaagaaa
gtgatcggcgtcattgaccaatttaagccccaggacctttccggggtgaccaaggaaaca
gatatgtttgaggacgtggagttctgcatcctgaatggcaccgaagatcatcccaagtct
gaactggaaaagggtgtggccaggtgtggaggttttgtagttcagaaccctggacgggac
acctactgcgtggttgccggtgtggagaacatgcgcgtgaagaacctgatttcatccaac
cagcatgacatagtttgggccacctggctgctggagtgcctggaccagaaggtggtggtt
ccatggcaaccccgccacatgatccacatgtcgccttccaccagggagcactttgccaag
gagtacgacagctatggtgacagctactttgttgacacagacgagcagcagctgcgggaa
gtgttcaacaggatcagcagcgcagacgcagcaaacgaggtgaatgtcacgcaggtggag
ggacgctacggctgggatgaccttccaaccagcatgttcagaccgttcacagcatatatg
gacagatttgctgacataggagaccctaaaagtgccatacctgccacctgcctggacacc
agggcattggagtttcgttaccatggaggaaaagtggtggaagagctggaggaaggcgtt
tcacatgttattattgcagaggcaacaagacttctggatttgagaactctgaggcgctgc
tttaggaggaagtttaagatagtaaaagagacatgggtgactgattcaatcaaagcaggg
catgtgatgaatgacactgaatatctggcttga
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