Maylandia zebra (zebra mbuna): 101468974
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Entry
101468974 CDS
T02814
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101468974 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mze04054
]
101468974 (dhx58)
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101468974 (dhx58)
Pattern recognition receptors [BR:
mze04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
101468974 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_22
GlutR_N
nSTAND3
PhoH
CNDH2_C
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
101468974
NCBI-ProteinID:
XP_014263552
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All DBs
Position
LG4:22266504..22279508
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AA seq
1360 aa
AA seq
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MSDFGLYTYQQEVVERALKRENIIIWLPTGGGKTRAAVYVAKKHLETTPNAKVMVLVNKV
HLVDQHYNKEFEPHLGLRYAVRKVSGESDEKDFFGLVVQESDVVICTAQILYNALINKEE
ARHVELSDITLLIIDECHHTHKESVYNKVMRLYVEKKLKGEKPLPQILGLTASPGTGGAK
ALDKAVEHVLEICANLDSAIVSTKQYAPELKEVVPRPRKTFNIVNMRDRDPFGDHLKSMM
TIIHGYMDIPPDFKLRECGTQEYEADVVVLEQRGVRDNNRLLAQCALHLRQYNDALLIND
TLRMIDAYRSLEEYYSTKSTKAIDGTDFFLLGLFEENQVELRNLAMDSRFENPKMDELQR
TLLQQFGSGVPSRGILFSKTRKSTHCLKDWVLKNRALKDAGIKADILTGAGNGITYMTQN
EQAETIRSFRMGSLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARAKNSQ
YAVVAQAGGREHRRERINEYLEELTGKAIDRVQRMSHHEFYLKLSELQQKAIISSKIEES
CKTEKRRSNTASNIQFLCRNCFTPVASGSDIQLVDNTQYVNVSPDFKNHYKVAERVILER
SFEDWEPGCRIRCKKCDKEWGFEIKYKKHVLMPNLAIKNFALETPKGRITVKKWKDVPFT
VEDFDYEEYCQENFPDLFKGHCEMADFGLHNYQQEVVERALKGENIIIWLPTGGGKTRAA
VYVAKKHLETTPNAKVMVLVNKVHLVDQHYNKEFEPHLGGTFIIKKVSGENKEKDFFGLV
VKQSQVVICTAQILYNALINKEEARHVELSDITLLIIDECHHTHKEEAYNKVMRLYVEKK
LKGEKPLPQILGLTASPGTGGAKALEKAVEHVLEICANLDSVIVSAKEYASELKEVVPKP
RKSFKIVKERLKDPFRDHLISMMNSIHSHMNLPPDFRLKECGTQEYEADVVNLEHRGIQE
KNRLLAQCALHLRQYNDALLINDTLRMIDAYRSLEEYYSKKRTNPIDGTDTFLLELFEEN
QVELKNLAMDSRFDNPKMDELQSTLLQQFGSGVPSRAIIFSKTRKSTHCLKDWVLKNRAL
QEAGIKADIFIGAGNGNTYMTQNGQAETIRNFRMGSLNLLISTSVAEEGLDIPECNLVVR
YGLLTNEIAQQQASGRARAENSQYAVVAQAGGREDRRERINEYLEELTGQAIDRVQTMTP
QDFCTKITQLQEMVVTCTKIEQRRQAKKRSRNTASSIQLLCRSCFTPVASGSDIKLVENM
YVNVNPDFKKHYTFGDQLTLKRSFEDWEPGCTIGCKICSEKWGFEIKYKKCAILPNLAIK
NFVLESPGQERLPVKKWKDVPFTVEEFNFKEYCQEHFLLD
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattttggactatatacctaccagcaggaagtggttgaaagggctcttaaacga
gagaacatcataatatggttaccgacaggaggtggaaagacccgcgctgcagtgtatgtg
gccaaaaaacacctggagaccacaccaaatgctaaagtgatggttctcgtaaacaaggtt
catcttgttgaccaacactacaacaaagagtttgagcctcacctgggtctacgctatgct
gttaggaaagtgagcggagagagtgatgaaaaggacttttttgggttagtggtgcaagag
tcagatgtggtcatctgcacagcacagatcttgtacaatgctctgattaacaaggaggaa
gcaagacatgtcgagctctcagatattactctgctgataattgatgagtgccaccatact
cacaaggagtctgtctacaacaaagtaatgagactttatgtggagaagaagctgaaggga
gaaaaaccactgccacagatcttgggcctcacagcatctccaggaacaggaggcgcaaag
gcactggacaaggctgtggagcatgtactggagatttgtgccaacttggattcagccata
gtttcaactaaacagtatgctcctgaactgaaggaagtggtgcccagacccagaaaaacc
ttcaacattgtcaacatgagagatagagatccttttggtgatcatctgaagtcaatgatg
acgattatccacggttacatggatattcctccagacttcaaactgagagagtgtggaaca
caagaatatgaagcagatgtggtggttctggaacagcgaggagtacgagacaacaacaga
ctgcttgcacaatgtgcgttacacctcaggcagtacaatgatgccctcctcatcaatgac
accttgaggatgattgatgcttatcgttccctagaggagtattactccacaaagagcacc
aaggccattgatgggacagacttcttcttgttgggactttttgaagagaatcaggtggag
ctaaggaaccttgctatggattctcgctttgagaacccaaagatggatgaacttcaacgc
actctgttacaacagtttgggtcaggtgtcccatcaagaggaattctcttcagtaaaact
cgcaaaagcacccactgcctgaaagactgggtcctcaaaaacagggcattgaaagatgct
ggcatcaaggcagacatcctcactggtgctggtaatggcatcacctacatgacacagaat
gaacaggcagaaacaatcaggagtttccgtatgggttctctgaacctcctgatctccacc
agtgtggccgaagaaggtcttgatatacctgaatgcaacctggtggtgcgctacggactc
cttactaatgagatcgcccagcagcaggcaagtggacgtgcacgagcaaaaaacagtcag
tatgcagtcgtagcccaagcaggcgggcgtgaacatcgcagagagcgcatcaatgaatat
ctggaggagctgactggtaaagccattgaccgtgtgcaacgtatgagtcaccacgagttt
tatttaaagttaagtgagcttcaacaaaaggcaattatttctagtaaaattgaagaaagc
tgcaaaacggagaagaggaggagtaatactgcttccaatatccagttcttgtgtcgaaac
tgttttacccctgtggcttctggcagtgacattcaacttgttgacaatacgcaatatgtc
aacgtcagccctgactttaagaatcactacaaagttgcagagcgggtgattctagaaagg
agctttgaggactgggagcctgggtgtagaatcagatgcaaaaaatgcgacaaggaatgg
ggattcgagataaaatacaaaaagcatgtcttaatgccaaatctagccattaagaacttt
gccctggaaacccccaaaggcaggataacagtaaagaaatggaaagatgtacctttcact
gttgaggactttgactatgaagagtactgccaggaaaacttccctgacctctttaaaggg
cactgcgaaatggcagattttggactgcataactaccagcaggaagtggttgaaagggct
cttaaaggagagaacatcataatatggttaccgacaggaggtggaaagacccgcgctgca
gtgtatgtggccaaaaaacacctggagaccacaccaaatgctaaagtgatggtcctcgta
aacaaggttcatcttgttgaccaacactacaacaaagagtttgagcctcacctgggtggt
accttcattattaagaaagtcagtggagagaataaggaaaaggacttttttgggttagtg
gtgaagcagtcacaagtagtcatctgcacagcgcagatcttgtacaacgctctgattaac
aaagaggaagcaagacatgtcgagctctcagatattactctgctgataattgatgagtgc
caccatactcacaaggaggaagcctacaacaaagtaatgagactctatgtggagaaaaag
ttgaagggagaaaaaccactgccacagatcttgggcctcacagcatccccagggacagga
ggcgcaaaggcactggaaaaggctgtggagcatgtactggagatttgtgccaacttggac
tcagtcatagtttcagctaaagaatatgcatctgaactgaaggaagtggtgcccaaaccc
agaaaaagcttcaaaattgtaaaagaaagacttaaagatccgtttcgtgatcatctgata
tcgatgatgaacagcatccacagtcacatgaaccttcccccagacttcagacttaaagag
tgcggaacacaagaatatgaggcagatgtggtgaatctagagcaccgaggcatacaggag
aaaaacaggctgcttgcacaatgtgcgttacacctaaggcaatataatgatgccctcctc
atcaatgacaccttacggatgattgatgcttatcgctccttagaggagtattactccaaa
aagagaaccaatcccattgatgggacagacaccttcctgttggaactttttgaagagaat
caggtggagctaaagaaccttgctatggattctcgctttgataacccaaagatggatgaa
cttcagagcactctgttacaacagtttgggtcaggtgtcccatcaagggcaatcatcttc
agtaaaactcgtaaaagcacccactgcctgaaagactgggtcctcaaaaacagggcattg
caggaagctggcatcaaggcagacatcttcatcggcgctggtaatggcaacacctacatg
acacagaatggacaggcagaaacaatcaggaatttccgtatgggttctctgaacctcctg
atctctaccagtgtggccgaagaaggtcttgatatacctgaatgcaacctggtggtgcgc
tacggactccttactaatgagatcgcccagcagcaggccagtggacgtgcacgagcagaa
aacagtcagtatgcagtcgtagcccaagcaggcgggcgtgaagatcgtcgagagcgcatc
aatgaatatctggaggagctgactggacaagccattgaccgtgtgcaaactatgacccct
caagacttttgcacaaagattactcagcttcaagagatggtagtcacttgcaccaaaatt
gaacagaggcgccaagcaaagaagaggagtcgtaacactgcttccagtatccagctcttg
tgtcgaagctgttttacccctgtggcttctggcagtgacatcaagctagttgagaacatg
tacgtcaacgtcaaccctgactttaagaaacactatacatttggagaccaactgactcta
aaaagaagctttgaggactgggagcctgggtgtacaatcggctgtaaaatatgcagcgag
aaatggggattcgagataaagtacaagaagtgtgccatactgccaaatctagccattaag
aactttgttctggagagccctggtcaagagcggctcccagtgaagaagtggaaggatgta
cctttcactgttgaggagttcaactttaaagagtactgccaggaacatttcttgctcgat
taa
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