Maylandia zebra (zebra mbuna): 101479550
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Entry
101479550 CDS
T02814
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03030
DNA replication
mze03410
Base excision repair
mze03420
Nucleotide excision repair
mze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101479550 (lig1)
03410 Base excision repair
101479550 (lig1)
03420 Nucleotide excision repair
101479550 (lig1)
03430 Mismatch repair
101479550 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mze03032
]
101479550 (lig1)
03400 DNA repair and recombination proteins [BR:
mze03400
]
101479550 (lig1)
Enzymes [BR:
mze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101479550 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
101479550 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101479550 (lig1)
DNA replication proteins [BR:
mze03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101479550 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101479550 (lig1)
DNA repair and recombination proteins [BR:
mze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101479550 (lig1)
NER (nucleotide excision repair)
Other NER factors
101479550 (lig1)
MMR (mismatch excision repair)
Other MMR factors
101479550 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
101479550
NCBI-ProteinID:
XP_004555205
UniProt:
A0A3P9DCC4
LinkDB
All DBs
Position
LG18:5363159..5426987
Genome browser
AA seq
1013 aa
AA seq
DB search
MQRSIASFFQPKSKDIQKKAAEEPVKKPVKSPLKVQNGVQEAESPIKKVVKRCRQILDSD
DDEAPVVKEQVPSKGQGDKEAPGKTEKKDDAFKAVPTPLSPPSTPATPVTPTTPATPATS
ASPGTPSTPNSVSPTGIVKRKTARKMFPKRKLNESGSGSDSQKEEAEVKEEQGQQNKRPR
VETSASGEGNADEPMEEDTKEERGEKAATEANNPGDEEVENKSKEEETVEKEEQVEKKSP
DEKEEKAEEAEKKNEAKPKTDDDDDEKGPAVAKTEVVEKDTRGTEESPKSQTVKRQKEAK
EQKDKEPTRKAPISSFFAPRKAAVKTEKPEKNEGEKKTSPERKRSEEESKDTKGEATSGQ
TNYDPSRPNYHPVDNACWKQGQKVPYLAVARTFERIEEDSGRLRNIETLSNLFRSVLLLS
PDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVA
ESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIV
RSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPTVIDAGKGMSAESRRAWIEEKSLIL
KQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAF
TCEYKYDGERAQIHILEGGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSEAV
AWDHEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLR
ESFSEVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWL
KLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDE
DLEQHYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVD
PEKGISLRFPRFLRIRDDKKPEDATAAAQIAELYKKQQQIQNQGDKADPEDYY
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagagcaaggacattcagaagaaagct
gcagaggagcctgtgaaaaagcctgtcaagagtccactgaaggtgcagaacggtgttcag
gaagcagagtcgcccatcaagaaggttgtgaaacgctgccgtcaaatcctggacagcgat
gatgacgaggcgccagtcgttaaagaacaagttcccagcaagggacaaggagacaaagaa
gctcctggtaaaacagaaaagaaggatgatgcgtttaaagccgttcccacccccctgtct
ccaccatcgaccccagccacgcctgtaaccccgaccacccctgccactccagccacctct
gcttcaccggggacccccagcactcccaattccgtctcccccactgggatcgtcaaacgc
aagactgcaaggaagatgttccctaagaggaagctcaacgagagtgggagtggcagtgac
agtcagaaagaagaggcagaggtcaaggaggagcagggtcagcaaaacaaacggccacgt
gtggagaccagtgccagcggtgaaggtaacgcagatgaacccatggaggaggacacaaag
gaagaaaggggggaaaaggcagcgaccgaggctaacaacccaggggacgaggaggtggag
aacaagagcaaagaggaagaaactgtagaaaaagaggagcaggtggagaaaaagagccct
gatgagaaggaggagaaagctgaggaggcggaaaagaaaaatgaagcaaagccgaagaca
gatgatgatgatgatgagaaagggcctgccgtagccaaaacggaggtggttgaaaaggac
acgcgaggcacagaagagagcccgaaaagtcaaacggtgaaaaggcagaaagaagcaaaa
gagcagaaagataaggagccgaccaggaaagcccccatcagcagtttctttgctcccaga
aaagcagcagtgaagacggagaagccggagaagaatgagggggaaaaaaagacgagtcca
gagaggaagaggtcagaggaggagagtaaagacacgaaaggtgaggcaacctcaggacaa
acaaactatgatccatcgagaccaaactatcatcccgtggacaacgcttgttggaaacag
ggccagaaagtgccctacttggcagtggctcgcacctttgagaggattgaagaggactct
ggcaggctgagaaacatcgagacactgtcaaacctgtttcgctctgtgctgctgctctcc
ccagatgacctgctctgctgcgtgtatctgtgtctgaaccaactcggtcctgcctatcta
gggatggagcttggtgttggtgagacggtgctgatgaaagctgttgctcaagccactggg
cgacaattggacaaaatcaaagcagaggcacaggagaaaggagatttgggcctagtggcc
gagagctcccgtagcaaccagcgcatgatgtttcagccggccagtctgacagcagggggc
gtgttcaggaaattgaaggaaattgccagcatgagtgggaactcggccatgaataagaaa
atcgacatcatcaaaggcctctttgtggcatgccgcttttcagaggcccgctacatagtc
aggtctctggctggaaagctgaggattggtcttgctgagcaaagtgtgctctctgcactg
agccaagctgtctgcttgaccccacctggacaaggttttcctcccactgtgatcgacgca
gggaagggaatgagtgctgagagcaggcgggcgtggattgaagagaagagcctcattctc
aaacagacttactgcgagatgcccaattacgatgttctgatccccgttttgctaaaagag
ggcatagaccagctgcccaatcactgcaagctcactccaggtgtaccactgagacccatg
ttggctcacccaactaagggtgttggcgaagtgatgaagaagtttgacgaggcagcgttc
acctgcgagtacaaatacgacggggagcgtgcacagattcacattttggagggtggcgag
gttcgaatattcagccgcaaccaggaagacaacaccagcaaatacccagatatcatctcc
cgcattcccaaggtgaagaaggactctgttgtatcttgtgtcctggactctgaggcggtg
gcctgggatcacgagaagaaacagatccagcccttccaggtcctcaccacccgtaagaga
aaggatgtggatgcatcagagatcaaagtccaagtgtgtgtgtacgcctttgacctcctc
tacctcaatggcgagtccctggtgcgacagccattgtgtcggcgtcgggctctactgaga
gaaagcttctcagaggtggagggagagtttgtgtttgcccgatccatcgactccgacaac
accgacaccatcgccgagttcctggagcaatctgtccgagactcctgcgagggcctcatg
gtgaagactctagagaaggatgccacctatgaaattgccaagcgctctcataattggctc
aagttgaagaaggactacttggagggagttggagacacagtggacctgtgtgtgattggg
gcctatctggggaaaggaaaaaggacaggcacctatgggggcttcctgctggcttgttac
gatgaagaaaatgaagagttccagtccgtctgcaagatcgggacaggcttcaaggatgaa
gatctggagcagcattacaagttcttaaaggagcacatcctgcccaagccccgtgcttac
taccgcgttgaccaatcagccgagcccgacgtgtggctggatgctgtgcaggtttgggag
gtgaagtgcgctgacctctcactgtctccggtctacaaagctgcaatgggaatggtggat
ccagagaagggcatttctctgaggttccctcgcttccttaggattagagacgacaagaag
cccgaggacgccacggccgcagctcagatcgccgagttgtacaagaagcagcagcagatt
cagaatcagggggataaagctgacccagaggactactactga
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