Maylandia zebra (zebra mbuna): 101486363
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Entry
101486363 CDS
T02814
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mze00535
]
101486363
Proteoglycans [BR:
mze00535
]
Extracellular matrix (ECM) proteoglycans
Others
101486363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Collagen
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
101486363
NCBI-ProteinID:
XP_012778845
LinkDB
All DBs
Position
LG19:complement(8104859..8155474)
Genome browser
AA seq
3110 aa
AA seq
DB search
MKIGLSLATAAFLAALLSSIDAQVEPPSNLKFHILNENTVEMSWMRPSATIEGFKIQVQV
PDGDEPTRDFTLDASATMTSLTDLTPDLDYSVSISSYYGSEESIPIFGQLTIQSSNSSGR
VRRPQADAIKCSVSAIADLVFLVDGSWSVGRENFKHIRSFIGSLAGAFDIGEDKTRVAVV
QYSSDTRTEFPLTRYTRRGDLLQAINSLPYKGGNTMTGDAIEYLVRNIFTEAAGSRKAFP
KVAMIITDGKSQDPVEAHARRLRNIGVEIFVLGIKGADEDELREIASTPHSKHVYNVPNF
DMIQEVQKEIITQVCSGVDEQLNILVSGEEMVEPASNLEVTEVSSKSMRVTWAPSLGDIT
GYKLTLNPMLPGMKRQELYIGAGQTSVNVRDLSPETEYEISLYALKGLTPSEPIVELEKT
QPVKVSTECSLGVDVQADVVLLVDGSYSIGLQNFAKVRAFLEVLVNSFDIGPNKIQISLV
QYSRDTYTEFALNTHHDINAVVRAVRTFPYRGGSTNTGRAMTYVREKIFVPARGARQNIP
RVMVLITDGKSSDSFRDAATKLRNIDVEIFAVGVKDAVRSELEAIANPPADTHVYEVEDF
DAFQRISKELTQSICLRIEQELLNIKKRSLLPPSDLRFSEITSRSFRATWVPPLANVLSY
LLRFRKAEDVTGDYISLALPGDTNTAVLPHLYPLTTYEVNVFAQYDKGDSFPLTGEETTL
EEQGAVRNLRVTEETTNSFKVSWQAAPGSVIRYRLSYVPLSGTGEILEAQTLGPETTIVL
QELFPITTYRVSVSAEYASGLGSEMQVDGTTKEVRGSPRDLRVFDETISTMKLAWRSAPG
NVLQYRIAFKPAEGGERKEISVKGDTTQAVLKNLQPATEYELFVSARYSSGLGDPLLGTG
TTLEELGSPRDLVTSDVTDTSFAVSWTAAPGNVRQYRVTYKSLFTTESGEAVIPGSSTTT
VLQGLTPETRYEVSVFAVYGHGTGQALVGEETTDVSAAGRSIVVSEETEKSMKVTWQPAP
GNVVNYRVTYKPQAGGRQLAAKVPGGTTTTVLRRLTPLTTYDITVVPVYRSGEGKARQGE
GTTLTPYKGPRNLQTSEPTKTSFRVTWDHAPGDVRGYKVTYHPVEDDIDLGQLLVGPYDN
TVVLEELRAGTKYTVSVFGMFEGGESMPLAGEEYTTYSDAPDPPNFDKPNTMCRTNAQAD
IVLLVDGSWSIGRLNFKTIRAFIARMVGVFDIGPDRVQIGLAQYSGDPKTEWHLNAHRTR
ESLLDAVSNLPYKGGNTMTGLALNYILQNNFKEDVGMRPSARKIGVLITDGKSQDDVIAN
SQNLRNQGIELYAIGIKNADENELRSIASEPNDIHMYNVADFSFLLDIVDRVSDNLCNSV
KGPGGAPDAPTNLVTSEVTHRSFRVTWDGPDDQPEKYRVEYRTLSGAPQQVIVDGSQTTV
VLQRLNPLTQYLVSVYSVVGEESSDALDGKETTLPLSAVRRMEIYDQQVTTMRVRWERAP
GATGYMLLYSAINATQPTTEQEIRVGGDTTDVQLVKLLPNTAYTLSLFALHGESASEPLT
KQGVTLPMPPAGELRVRDITHSTMTLDWDAAPGPVRKYLITYKPESGDAKELEVGGRVTS
RQLDNLISQTEYALAVTPVYDEGPGQPMLGEAITDVVPAPKNLRFTEVTHTSFVAHWEHG
APDVALYRIGWVKKGDANTQYAILNNDETTHLLENLESDTPYDVSVTAIYPDESESEDLL
GTERTLRRQNGSPLPLPAPTNLVVYNETTTTLNAMWTPPTGRVQNYKISYVPTSGGRIQT
TQVGGKKTTVLLPKLTPDTEYAISVVAVYAKGASGPLEGIGKTKPLGGVRNLRVTDPTTS
TLTVQWEPAEGSVRQYRIFYVPAAGGVEDMVQVSGSTYSTVLRNLDSDTVYTVSVVPVYA
AGEGLRMSENGKTLERSPVRNIQVYNPTTNTLNVRWEAATGPVQQYRVVYSPLNGAKPSE
SILVPGSTTTALLQQLLPNTDYNVGVVALYSDGEGPAIMDEGKTLPRSAPRNLRVYDPTT
TTLSVSWDHADGPVMEYRITYAQITGDPIEGYTTVPGNRNNVILQNLDPDTPYNIKVTAI
YADGAGGEVDGDGRTVGMLGPRNLRVSDEWYTRFRVSWDPAPSRVNGYKIIYQPEGSDES
MEVSVGDVTSHQLHNLKPGTTYDLKVLAQYNTGDSAPLVGQGTTLYLNVTDLNTYNVGYD
SFCLRWAPHRAATSYRLKVNPFDTSRSGAQEITVRGSENSYCFDGLTPDTLYNATVYTQT
PNLEGPGVSIKERTLVKPTPVPTKAPTPPPPATVPPALDVCKGAKADLVFLIDGSWSIGD
DSFNKVLQFVTSMTAAFDVISPKGMQVSFVQYSDDARTEFKLNTYHDKGIVISALQGVRY
RGGNTKTGIALKHVYEKVFTSDNGMRRNVPKVLVVVTDGRSQDEVKKSAEKLQHSGYSMF
VVGVADVDMTELRSIGSKPSERHVFVVDDYDAFAKIQDNLITFICETATSTCPLIYINGF
TTPGFRMLEAFNITDKTFAAMNGVSMEPGSFNSYIAYRLHKDSFLNQPTKEIHPDGLPPS
YTIILLFRLLPDTPSEAFDIWQIADKNNNPEVGVTVNPSSKTVTFYNKDTRGEIQRATFN
EQQVRRVFHGSFHKLHITVSPEKVKLNIDCQEVAEKPIKEANNITLDGYEVLGKMVKSGG
GRRQSATFQLQMFDIVCSLSWISRDRCCDLPATRDEAKCPSLPHSCTCTQDSIGPQGPPG
PLGSPGTKGPRGDRGDPGKPGSMGPRGEQGLPGSMGPPGPQGPNGLSLPGEPGRPGPKGD
PGDPGMPGLQGPAGQRGPLGPVGPSGARGPPGKEGPSGPRGPPGPMGNPGNPGVPGITGK
PGKPGDPGSPGPVGLKGEKGERGDFASQNMMRSIARQVCEQLVNSQMSRVDMLLNQIPSG
YRSNTPGPPGPPGPPGNTGSRGEPGQPGRTGFTGNPGLPGNQGERGLPGDKGERGAPGTG
IRGQRGPSGPPGPPGESRTGSPGPSGSAGPRGPPGRQGTPGVRGPPGPPGYCDSSQCVGI
PYNGQGYTANQYPPEPEVVNIPVEPAGEFETRNPRGKRSLPQDNTETLAS
NT seq
9333 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagggctgtctctggccacggctgccttcctggcggccctgttgtcctccata
gatgctcaagtggagccgccctcaaacttgaaatttcacattctaaatgagaatacagtg
gaaatgtcgtggatgagaccctcggcaacgatagagggcttcaaaatacaagtgcaagtg
ccggatggagatgaaccgaccagagactttaccctagatgcatctgccactatgacatcg
ctcactgacctgacccctgacttggactactctgtgtcaataagctcctattatggctca
gaggagagcatccccatctttggacaactgaccatccagtccagtaacagcagcggacga
gtcaggaggccacaggcagatgcaatcaagtgttcggtcagtgcgatagccgacttggtt
ttcctggtggacggctcttggagtgtaggaagagaaaacttcaaacacatccggagcttt
atcggctcgctggcaggggcctttgacattggcgaggacaaaacccgtgtggcggtggtt
cagtacagctcagacactcgtacagagttccccctcactcgttacaccaggagaggagac
ctgctccaagctatcaactcacttccgtataaaggaggaaataccatgacaggcgatgcc
atagagtacctggtgagaaacattttcactgaggcagctggatccaggaaagcttttcca
aaggtagccatgatcatcactgatggaaaatcccaagacccagtggaggcgcatgctaga
agacttaggaacattggagtggaaatatttgtcctaggtatcaaaggagcagatgaggat
gagctcagggaaatagcctccacacctcacagcaaacacgtgtacaatgtgcccaacttt
gacatgatccaggaggtccagaaagagatcataacacaagtgtgctccggtgttgacgag
cagctgaacattctggtcagcggagaggagatggtggagccagcctccaacttggaggtc
acagaagtttcatccaagtcaatgagggtgacgtgggccccgtctctgggtgatatcacg
ggctacaagctaaccctcaatcccatgctgcccggcatgaaacgccaagagctgtacatt
ggggctggacagacatccgtcaacgtccgtgacctttcccccgagaccgagtatgaaatc
agcctctacgcactcaaaggtctgactcccagtgaacccatcgttgaactggagaagacg
cagcctgtcaaggtgtcaacagagtgctcactgggagtggatgtgcaggccgatgtagtc
ctgctggtcgatggctcgtacagtatcggattacaaaactttgcaaaagtccgtgccttc
ctggaggttctggtcaactcctttgacatcggaccaaacaaaatccagattagcttggtc
cagtacagtcgcgacacatacaccgagtttgccctcaacactcaccatgacattaacgct
gtcgtcagagctgtgcgcaccttcccctaccgcggcggttccactaacaccggcagggcc
atgacttacgtcagggagaagatcttcgtcccagctcgtggagcgagacagaacatcccc
cgcgtcatggtcctgatcacagacggaaagtcgtcagactcttttagggatgcggccacc
aaactgaggaatattgatgtggaaatatttgctgttggcgtgaaggatgcggtgagatca
gagctggaggccatcgctaatccaccggctgacacccatgtgtatgaggtggaggacttt
gacgcttttcagaggatctctaaggagctgactcagtccatctgtctgaggattgaacag
gagctgctcaacatcaaaaagagaagtttgcttccaccgagcgatttgcgcttttctgaa
attacctcccgaagcttccgtgccacctgggtacctcctcttgccaatgtcttgtcttac
ctgctacgtttccgcaaggcggaagatgtcaccggagactacatttccctggctttgccc
ggcgataccaacacagctgtccttccccatctttatcccctcaccacctatgaagtcaat
gtctttgctcagtatgataaaggagacagtttccctttgacgggtgaagagacaactctc
gaagaacaaggagctgtaagaaatctacgagtgacagaagaaacaaccaacagtttcaag
gtgtcgtggcaagccgcgccgggttcagtgatcagataccgcctgtcctacgtcccgctg
agcggcacaggagagatactggaggctcagacccttggcccagagaccaccatagtcctc
caggagctcttccccatcactacctaccgtgtgtctgtgtctgctgagtacgcatccggc
cttggaagcgagatgcaggtggatggaaccaccaaggaggtccgcggctctccccgtgac
ctgcgtgtcttcgatgaaacaatatctacgatgaaactggcgtggaggtctgctcctggc
aatgttcttcaataccgcattgccttcaaacctgctgagggaggtgagaggaaggagatc
tctgtcaaaggagacaccacccaggctgtacttaagaacctccagccagccactgagtat
gagctgtttgtcagcgctcgctattcttctggtttgggcgatcctctcctgggcaccgga
accaccttagaagagctcggctcacccagagacttggtgaccagtgacgtcacagacacc
agttttgccgtgtcttggaccgcggccccgggtaacgttcgtcagtacagggtcacgtac
aagtctctgttcactacggagtctggggaagcagtaataccaggaagcagcaccaccaca
gttttgcagggtctcaccccagagacacgctacgaggtgtctgtgtttgccgtctacggc
catggaacgggccaggcattggttggagaagaaaccacagatgtttcagctgctggcaga
tcgatcgtcgtctcagaggagacggagaagtccatgaaggtgacatggcagccggcacct
ggaaacgtcgtcaactaccgcgtcacttacaaaccacaggcaggagggcgccagctggcg
gccaaagtgcccggtggcactaccaccactgtgctgagacgccttacccctctcaccact
tatgacatcactgtggtgcccgtttatcgctccggagaaggcaaagcaaggcaaggggaa
ggaactacattaacaccttacaaaggcccgaggaacctccagacttcagagcccaccaag
accagtttccgtgtaacctgggaccacgctcccggtgacgttaggggctacaaagtcact
taccacccagtggaggatgacatcgacctggggcaacttctggttggtccctatgataac
actgtggtgctggaagaactcagagctggtaccaaatacacagtgagtgtgttcggtatg
tttgaaggaggggagagcatgccgttggctggagaggagtacaccacctactctgacgca
cctgatcctccaaattttgacaagccaaatacgatgtgtaggaccaatgctcaggctgac
attgtgcttctggtggacggctcctggagtatcggacgtctgaacttcaagactattcgt
gccttcattgcacgtatggtgggcgtctttgacatcggccctgatcgggtccaaatcggg
cttgctcagtacagcggagacccaaagaccgaatggcacttgaatgctcaccgaacccga
gagtctctcctggatgctgtgtccaacctgccctacaagggaggaaacaccatgacaggt
ctggctttgaactacatcctccagaacaatttcaaagaggacgtcgggatgcgtcccagc
gctcgaaagattggcgtcttgatcactgacggaaaatcgcaggatgatgtcattgccaac
tctcaaaacttgcgcaatcagggcattgagctctatgccatcggtattaagaatgcagac
gagaacgagctgaggtccatcgcctctgagccgaatgacattcacatgtacaacgtggct
gatttctccttcctgctggacattgtggaccgggtttctgacaacctgtgtaacagtgtc
aaagggccaggaggcgctccagatgcacccactaatctggtgacatcagaggtgactcac
cggtccttcagagtcacctgggacggccccgacgaccaaccagaaaagtaccgtgtggag
tacaggactttatcgggagccccacaacaggtgatcgtggacggcagtcagaccactgtg
gttctccagaggctgaaccctctcacacagtacctggtcagcgtctactccgtggtggga
gaggagagcagtgatgctttggatggaaaagagaccacacttcctctgagtgccgtgagg
aggatggagatttacgatcagcaggtcaccaccatgagagtgagatgggaaagggcaccg
ggagccacaggctacatgctgctctacagcgccatcaatgctacgcagcccactacagag
caggagatcagagtgggcggcgacacaaccgacgtccagctggtgaagttgctccccaac
acggcctacacgctttccctatttgccctccatggagaatcagccagcgaaccactgacc
aaacagggagtcacattgcccatgccacctgcgggagaactgagggttcgggatattacc
cacagcaccatgacgcttgactgggatgctgctcccggtcccgttcgcaagtacctcatc
acctataagcctgagagtggagatgcaaaagaactggaagtgggaggacgcgtgaccagc
agacagttggataacctgatctctcagaccgagtacgctttagctgttactccagtctac
gacgaaggtcccggacagccgatgctgggagaggccatcacagatgtggttccagcacca
aagaacctgcgattcacagaagtcacgcataccagctttgtagctcactgggagcatgga
gcgcctgacgtggctctgtaccgcattggctgggttaagaagggagatgccaacacccaa
tacgccattctgaacaatgatgagacgacccacctgctggagaacttggagtcagacacg
ccctacgacgtgtccgtcactgcgatctacccggatgagtcggagagcgaggacctgcta
ggcaccgagaggacattgcgccgtcaaaatggttccccactgcctcttccagcgcccacc
aacctggttgtgtacaatgaaaccaccaccactctgaacgccatgtggactccaccgacg
ggccgtgtccagaactacaagatctcttacgtccccacatctggaggcaggattcagact
acccaggttggaggaaagaagactacagtcctgcttcctaagctgacgcctgacaccgag
tacgccatcagcgtggtggcagtctatgccaaaggagctagcggaccgctggagggcatc
ggaaagaccaagcctctgggtggtgttaggaacctgcgggtaactgaccccaccaccagc
accctgaccgtccagtgggagcctgctgagggtagcgtccgtcagtacaggatcttctat
gtgcctgcagctggaggagtggaagacatggtgcaggtatcaggcagtacctacagtacc
gtcctgaggaacctggattctgatactgtgtacactgtgtctgtggttcccgtatatgct
gctggagaaggactgcgcatgtctgagaacggcaaaacattggagcgcagccccgtcaga
aacatccaggtttacaaccccaccaccaacactttgaacgttcgctgggaagctgccaca
ggtccagtccagcagtaccgggtggtctactctcctctgaacggtgccaagccttcagaa
tcaattctggtaccagggtcaaccaccacagccttgttgcagcagctgcttccaaacact
gattacaatgtgggagttgttgctctgtacagcgatggcgaaggacctgctatcatggat
gaaggaaagacattgcctcgaagtgccccgaggaacctgcgcgtatacgaccccaccacc
actaccctctctgtcagctgggaccatgcagatggtcctgtcatggagtaccgcatcacc
tacgcccagatcacaggagacccgattgagggatatactacagtgccaggaaaccgaaac
aacgtgatcctgcagaacctggacccggacacgccgtataacatcaaagtgaccgccatc
tatgctgatggagcaggaggagaggtggatggtgacggacgcacagtgggaatgctcggc
cccaggaatctgcgtgtttctgatgagtggtacacccgcttcagggtgtcctgggacccc
gccccctccagggttaacggatacaagattatctaccaacctgagggctcggatgagtcc
atggaggtgtctgttggagacgtaacctcccaccagctccataacctgaaacctggaacc
acctatgacctgaaggtgttggcacagtacaacacgggtgacagtgcacctttggtcggt
caaggcaccaccttgtatctgaatgtgacggacttgaacacctacaacgttggctacgac
tccttctgcctccgatgggcccctcacagagcggccacctcttacagactcaaagtcaat
ccttttgatacctccaggagcggggctcaggagatcaccgtcagaggctcagagaacagt
tactgctttgacggcttaacccccgacactctttacaatgccaccgtgtacacgcaaacg
cccaatctcgagggacctggagtcagtatcaaagagaggacgttggttaaacccacccca
gtgccaacaaaggctcccactcctcctcctccagcaacagtcccacctgcgttagatgtg
tgcaaaggtgccaaggccgacctggtcttcctgatcgatggttcctggagtattggagac
gacagcttcaataaagtcctccagtttgttacaagcatgactgcagccttcgatgtcatc
agccctaaaggcatgcaggtttcatttgtgcagtacagcgatgacgccaggaccgagttc
aaactgaacacctaccacgacaaaggcatcgtgatctcagctctgcagggcgtccgctac
agaggaggcaacaccaagacaggcattgctttgaagcacgtctatgagaaggtgttcacc
tcagacaacggcatgaggaggaacgtcccgaaggtgctggtggtcgtcacggacggacgc
tcccaggatgaggtcaagaagagtgcagagaagctgcagcattctggctacagcatgttt
gtggtcggagtggccgacgtggatatgaccgagctgagaagcatcggcagcaagcccagc
gagagacacgtgtttgtggtagacgactacgacgcttttgccaaaatccaggacaacctg
atcaccttcatttgtgaaacagccacttccacttgccctctgatctacatcaatggattc
accacgcctggcttcaggatgctcgaggcgttcaatatcacagacaagacattcgctgcc
atgaacggtgtgtccatggagccgggctcctttaacagctacatcgcctacaggctgcac
aaagattccttcctgaaccagcccaccaaggagatccatccggatggtcttcccccttct
tacaccatcatcctgctcttccgcctcttgcccgacacgccctctgaagcttttgatatc
tggcagattgccgacaaaaacaacaaccctgaagtcggggtcacggtcaacccttccagc
aaaacagtcacgttctacaacaaggacacccgaggagagatccagagagccacatttaac
gagcagcaagtgaggcgggttttccacggcagcttccacaagctccacatcaccgtctct
ccagagaaagtcaagctcaacattgactgccaagaggtggcagagaagcccatcaaagag
gccaacaacatcacactggatggctatgaagtgcttggcaagatggtcaagtctggaggt
ggaaggaggcagtctgctacattccagctccagatgttcgatatcgtctgcagtttgagc
tggatcagccgagacagatgctgcgacctgcctgcaacaagagatgaggccaagtgtcca
tcccttcctcactcttgcacgtgcacgcaggacagcatcggcccccagggacctcctgga
cctttgggaagcccgggcaccaaaggacctcgaggagacagaggagatcctggcaagcct
ggttcgatgggtccacgtggtgagcaaggacttccaggttcgatgggaccaccaggtcca
caaggccctaacggactctctctgcctggagaaccaggtcgcccaggaccgaagggagat
cccggagacccaggcatgcccggtctgcaaggtcctgctggacagcgcggtcctctgggc
cccgttggaccgagcggagcgcgggggccaccaggaaaggagggaccatctggacccaga
ggcccaccaggacccatgggaaatcctggaaatccaggtgttccaggaataacaggaaaa
ccaggaaaaccaggagatccaggaagtccaggacctgttggccttaaaggagagaaagga
gagaggggagattttgcatcccagaacatgatgcgctccattgcccgacaagtttgtgaa
cagcttgtgaacagtcagatgagcagagtcgacatgctgctcaaccagattccttccgga
tatcgtagcaacactcctggaccacctgggcctccgggccctcctggcaacacgggatcc
cgcggagagcccggacagcctggccgaactggtttcactggaaaccctggtttacctgga
aatcaaggagaaagaggtttgccaggagataaaggagagcgaggggctccaggaaccggt
atcagaggacaaagaggtccaagtggaccaccagggccacccggagagtcacgaaccgga
tccccggggccttctggctccgctgggcctcgtggccctccaggtcgtcagggcactcca
ggcgtgaggggaccaccgggaccacctgggtactgcgactcctctcagtgtgttggcatt
ccttacaacggacaaggttacacagccaaccagtacccacctgaacccgaagtagtgaat
atacctgtggagccagctggagagtttgagacacgaaaccccagaggaaagcgatcgcta
ccacaggacaatacagaaacactagcatcatag
DBGET
integrated database retrieval system
