KEGG   Methanolobus zinderi: HWN40_04575
Entry
HWN40_04575       CDS       T06665                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mzi  Methanolobus zinderi
Pathway
mzi03030  DNA replication
mzi03410  Base excision repair
mzi03420  Nucleotide excision repair
mzi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mzi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HWN40_04575
   03410 Base excision repair
    HWN40_04575
   03420 Nucleotide excision repair
    HWN40_04575
   03430 Mismatch repair
    HWN40_04575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mzi03032]
    HWN40_04575
   03400 DNA repair and recombination proteins [BR:mzi03400]
    HWN40_04575
Enzymes [BR:mzi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HWN40_04575
    6.5.1.6  DNA ligase (ATP or NAD+)
     HWN40_04575
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HWN40_04575
DNA replication proteins [BR:mzi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HWN40_04575
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HWN40_04575
DNA repair and recombination proteins [BR:mzi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HWN40_04575
   NER (nucleotide excision repair)
    Other NER factors
     HWN40_04575
   MMR (mismatch excision repair)
    Other MMR factors
     HWN40_04575
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QLC49578
UniProt: A0A7D5E7B9
LinkDB
Position
910637..912328
AA seq 563 aa
MTSFREFAEACKVIEDTPGSLEMTSQVAELLDRVSIEELPIVTHFVMGEVFPAWSSEDIG
VGAGILYSALAKSSGFSVDEIEDIVKETGDIGKTAVRALGKNSNGQATFSSFLTELDELS
VTEVFQRFQSISKASGKGSQTAKIKNLQYLFNSASPEEVSYIARLAVEDMRIGVGEGIVR
DAIAAAFYVPVEVVERGFMLTNDLGLVATTAKQGGVEAVSGLDMQLNRPIRMMLAQVAPT
LEAAISDIGTPAIEWKFDGARVQIHKDGDNVKLYSRRLEDISNSLPDIVASIKKYVHADS
AILDGEAVAIDENGHPRAFQDILKRFRRKYDIQLTAKEIPLTLNIFDIMYLNGENLLDEP
LIRRRELLESCVENADSIRVDSQVVTDDPEMINEIYSKALKAGHEGIMIKNPESPYSPGK
RGKNWLKKKPVMETLDLVVIGAEWGYGRRTSYIGSYALACHDPETGRFLPVGKVATGFSD
EQLAELTALFSDLIIMEAGKKIEVKPEIIFEIAFEEIQKSTNYESGYALRFPRLVNVRDD
KSLEDVESIGRIEEMYRMQRERS
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgaccagctttagagaattcgcagaggcctgtaaagtaattgaagatactccgggctca
cttgagatgacctcacaggttgctgagctgctggacagggtaagcatagaggagcttccc
atagtaactcattttgtgatgggtgaggtctttcctgcgtggagtagcgaggatataggt
gtcggtgcgggaattctttattcagcccttgcaaaatcgtccggtttctcagttgatgag
atcgaggatattgtgaaggagacgggtgatataggcaagaccgctgtcagagcgcttggc
aagaattcgaatggacaggcaacgttctcatcctttttaactgagcttgatgagctttcg
gtgacagaggtattccagcgtttccaatccatatcaaaggcatcgggaaaaggatcacag
acagcaaagataaaaaacctccaatatcttttcaactcggcttctcctgaggaagtaagc
tatattgcaaggcttgcagttgaggatatgcgcataggcgtgggagaaggtatagtgcgc
gatgccatagcagctgctttttatgttccggtcgaagttgtagaacgcggattcatgctc
acaaatgatctcgggcttgtggcaaccactgcaaagcagggaggcgtggaagctgtttca
gggcttgacatgcaactgaatcgtcccataaggatgatgcttgcacaggtggcacccaca
ctggaggccgccatctcggatataggcacacctgcaatcgagtggaaattcgatggtgca
agggtccagatccacaaggacggggacaatgtgaaactctactctcgccgccttgaggat
ataagcaattcactgcctgatattgtagcctctatcaaaaagtatgttcatgcggattct
gcgatacttgacggagaagcagtggcgattgatgagaacggacatccacgggcttttcag
gatatactgaaacgtttcagaagaaaatacgatattcaactgaccgcaaaagaaattccc
cttactctgaatatctttgatatcatgtatcttaacggggaaaatcttcttgatgagcct
cttatcaggagaagagaactgcttgaaagctgtgtcgagaatgcggattctattcgggtg
gacagccaggttgtaacggacgatccggaaatgatcaatgagatctactcgaaggctctc
aaggcaggccatgagggaataatgataaagaatccagagtctccctattctcccggtaaa
cgtggtaagaactggctgaagaaaaaacccgtgatggaaacactggaccttgtggtcata
ggtgccgaatggggatacggaaggcgtaccagctatataggttcctatgcacttgcatgc
catgatcccgaaaccggccgtttcctgcctgttggtaaggtggcaaccggtttttccgat
gaacaactggctgaacttaccgctcttttctcggatctgataataatggaagcaggaaag
aagattgaagtcaaacctgagataatctttgagatagccttcgaagagatccagaaaagc
accaattacgaatccggctatgctctacgttttccgagacttgttaatgtccgggatgac
aaatcccttgaagatgtcgagagcattgggcgtatcgaggaaatgtacaggatgcagagg
gaaagaagctaa

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