Nocardiopsis akebiae: KGD83_24540
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Entry
KGD83_24540 CDS
T08903
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nake
Nocardiopsis akebiae
Pathway
nake03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nake00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KGD83_24540 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nake03400
]
KGD83_24540 (ligD)
Enzymes [BR:
nake01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KGD83_24540 (ligD)
DNA repair and recombination proteins [BR:
nake03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KGD83_24540 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QUX28371
LinkDB
All DBs
Position
complement(5746419..5747297)
Genome browser
AA seq
292 aa
AA seq
DB search
MATETAGVRAGRRVVEVRRPGKPLFGEGGATKEDLARYHARIAPLMLPHVRDRPVALARF
PDGIDAQGFFVKHPSVPDWVRTADTSGGRMMLCQDAAALVWCADQAAITLHAWQSRQPNL
GLPDRMVIDLDPAGDGPEAFAACRAAARDVREVLDGLGLAAYVMTSGSRGLHVRSPLRPE
ADDQEVRVLAEAVAGRVAARRPDELTTEVRKAARGDRLFVDYLRNGREQLAVVPYSVRAR
PGAPIAAPLAWEDLEKVETARDFTIGLEREECPFAGMGRHARSPHRALERLG
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagaccgcgggggtgcgcgcgggacggcgcgtggtggaggtgcgcaggccc
ggcaaaccgctgttcggagagggcggggcgaccaaggaggacctggcgcggtaccacgcc
cggatcgcccccctgatgctgccgcacgtgcgcgaccggccggtggccctggcgcgcttc
cccgacgggatcgacgcgcaggggttcttcgtcaagcacccgtcggtcccggactgggtg
cggaccgcggacaccagcggcggccggatgatgctgtgccaggacgcggccgcgctggtc
tggtgcgccgaccaagcggcgatcaccctgcacgcctggcagtcccggcagccgaacctg
ggcctgcccgaccggatggtgatcgacctcgaccccgcgggggacggccccgaggccttc
gccgcctgccgcgccgccgcgcgggacgtgcgggaggtgctcgacggcctgggcctggcc
gcctacgtgatgaccagcggttcccggggcctgcacgtgcgctcgccgctgcggcccgaa
gccgacgaccaggaggtccgcgtgctggcggaggcggtcgcgggccgggtggcggcccgg
cggccggacgagctgaccaccgaggtgcgcaaggccgcgcgcggggaccggctgttcgtg
gactacctgcgcaacggccgcgaacagctcgcggtggtgccgtactcggtgcgggccagg
ccgggtgcgccgatcgcggcgcccctggcctgggaggacctggagaaggtggagactgcc
cgggacttcacgatcggcctggagcgcgaggagtgcccgttcgcggggatgggcaggcac
gcccgctccccgcacagggccctggagcgcctgggctga
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