Nocardiopsis akebiae: KGD83_25490
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Entry
KGD83_25490 CDS
T08903
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nake
Nocardiopsis akebiae
Pathway
nake03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nake00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KGD83_25490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nake03400
]
KGD83_25490 (mfd)
Enzymes [BR:
nake01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KGD83_25490 (mfd)
DNA repair and recombination proteins [BR:
nake03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KGD83_25490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
DUF4404
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QUX28542
LinkDB
All DBs
Position
5977060..5980665
Genome browser
AA seq
1201 aa
AA seq
DB search
MSLIGLLADVSRDPALHSAIEAARGGRDPHLDLVAPAALRPFMVGALAADAPVGAQRPVL
AVTATEREASDLADALGCLLPEDSVALFPAWETLPHERLSPRSDTVGQRLAVLRRLAHPD
PSDPLTTPLRVVVAPVRSVLQPLVSGLGDLEPVRIRPGDEAPLEEVVQALANTGYARVDL
VEKRGDMAVRGGILDVFPPTEEHPLRLEFWGDTVEDVRYFQVADQRSIGPSGDEGPRTSA
SSGLFAPPCRELLLTDAVRERARALAEEHPSLAEILHKIADGVAVEGMEAFAPVLAERME
PFLAHLPEGAMVVGCDPERIRTRAVELEATSAEFLDASWINAASGGEAPIDLGESAYMSI
SELRSTAAELGLPWWGLTPFAADERGGAAEEDDAVVVGAVPSESYRGDTERALADIKGWL
HDNWSVVLVTQGHGPAERLVAMLRDAGLGASLAADLTERPKPAVATVTTGLVDHGFLLRS
VHTVVLTETDLAGQKSSTRDMRRMPSRRRGTVDPLQLKPGDYVVHEQHGVGRYLEMVSRQ
VQGATREYLLIEYAPSKRGQPGDRLFVPTEQLGEVTRYVGGEAPTLSKMGGAEWSKAKSR
ARKVVREIAGDLIRLYSARQASPGHAFGPDTPWQRELEDAFPYVETPDQLAAIDEVKKDM
SRSVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVALLVPTTLLVQQHLSTFTERYASF
PVTVKPMSRFQTDGEVEATREGLRSGEVDVVIGTHRLLSSETRFKDLGLVIIDEEQRFGV
EHKEALKRLRTQVDVLAMSATPIPRTLEMGLTGIREMTTILTPPEERHPVLTFVGPYEDK
QITAAIRRELMREGQVFFVHNRVASIDKVAASIQRLVPEARVAYAHGQMNEQQLEKVMVD
FWEKNFDVLVSTTIVESGLDVPNANTLIIDRADTYGLSQLHQLRGRVGRGRERAYAYFLY
PPERPLTETAYERLATVAQHTETGAGMYVAMKDLEIRGAGNILGAEQSGTIAGVGFDLYV
RMVGEAVAELKGDPDAAEEVETKVELPINAYIPHDYVPGERLRLQSYKRIASVTSEEDIL
AAYEELTDRYGAPPEQVDNLMAVARFRVLAKSAGLSDVVMQGNQIRFAPVELRESQELRL
RRLYPKTIHKETTRTLLVPVPKSGGLGGRPLRDLELLKWCTDLVNSIFEPAKRKPAPKED
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcattggacttctcgccgacgtctccagggacccggcactgcacagcgcgatc
gaggccgcccgaggcggccgcgatccccacctcgacctcgtcgccccggcggcgctgcgc
cccttcatggtgggggcgctggccgccgacgcccccgtgggcgcccagcggcccgtgctc
gccgtcaccgccaccgagcgcgaggcgtccgacctggccgacgccctgggctgcctgctg
cccgaggactcggtggcgctcttccccgcgtgggagacgctgccgcacgagcggctctcc
cctcgttcggacaccgtcggccagcggctggccgtactgcgccgcctagcccaccccgac
ccctccgatccgctgaccaccccgctgcgcgtggtcgtggccccggtgcgcagcgtcctg
caaccgctggtgtccgggctgggcgacctggagccggtgcgcatccgcccaggcgacgag
gcccccctggaggaggtcgtccaggccctggccaacaccggctacgcccgggtggacctg
gtcgagaagcgcggcgacatggcggtgcgcggcggcatcctggacgtgttcccgcccacc
gaggagcacccgctgcggctggagttctggggcgacaccgtcgaggacgtccgctacttc
caggtcgccgaccagcgctccatcgggccctccggcgacgagggcccgcgcaccagcgcc
tcctccgggctgttcgcgccgccgtgccgcgaactgctgctcaccgacgccgtgcgcgag
cgcgcgcgggcgctggccgaggagcacccctccctggccgagatcctgcacaagatcgcc
gacggcgtcgccgtggagggcatggaggccttcgcgcccgtgctcgccgagcgcatggag
ccgttcctggcccacctgcccgagggcgcgatggtggtgggctgcgaccccgagcgcatc
cgcacccgcgcggtggagctggaggccaccagcgccgagttcctggacgcgtcgtggatc
aacgccgcctccggcggcgaggcgcccatcgacctgggcgaatccgcctacatgtccatc
tccgagctgcgctccaccgccgccgagctgggcctgccctggtgggggctgaccccgttc
gccgcggacgagaggggcggagcggccgaggaggacgacgccgtcgtcgtcggcgcggtg
ccctccgagtcctaccgcggagacaccgagcgcgcgctggccgacatcaagggatggctg
cacgacaactggagcgtcgtgctggtcacccaggggcacggccccgccgagcgtctggtg
gcgatgctgcgcgacgccgggctgggcgcctccctggccgcggacctgaccgagcggccc
aaaccggcggtcgccaccgtcaccaccggcctggtcgaccacgggttcctgctgcggtcg
gtgcacacggtggtgctcaccgagaccgacctggccggacagaagtcctccacccgggac
atgcggcgcatgcccagcaggcggcgcggcaccgtcgaccccctccagctcaagcccggc
gactacgtcgtgcacgagcagcacggtgtgggccgctacctggagatggtcagccgccag
gtgcagggcgccacccgcgagtacctgctcatcgagtacgcgccctccaagcgggggcaa
ccgggcgaccgcctgttcgtgcccacagagcagctgggcgaggtcacccgctacgtgggc
ggcgaggcgcccaccctgtccaagatgggcggcgccgagtggagcaaggccaagagccgc
gcccgcaaggtggtccgcgagatcgcgggcgacctcatccggctgtactcggcgcggcag
gcctcccccggacacgccttcggccccgacaccccgtggcagcgcgaactggaggacgcc
ttcccctacgtggagacgcccgaccagctagccgccatcgacgaggtcaagaaggacatg
tccaggtcggtcccgatggaccggctgatctgcggcgacgtcggctacggcaagaccgag
gtggcggtgcgcgccgccttcaaggccgtgcaggacggcaagcaggtcgccctgctggtg
cccaccacgctgctcgtgcaacagcacctgtccacgttcaccgagcgctacgcctccttc
ccggtcaccgtcaagccgatgtcgcggttccagaccgacggcgaggtggaggccacccgc
gaggggctgcgctccggcgaggtggacgtggtcatcggcacgcaccggctgctgtcctcg
gagacccgcttcaaggacctgggcctggtcatcatcgacgaggagcagcgcttcggcgtg
gagcacaaggaggcgctcaagcggctgcgcacccaggtggacgtgctggcgatgtcggcc
acacccatcccgcgcaccctggagatgggcctgaccggcatccgcgagatgaccacgatc
ctcaccccgcccgaggagcgccacccggtactcaccttcgtggggccctacgaggacaag
cagatcaccgcggcgatccgtcgcgagctgatgcgcgagggacaggtgttcttcgtgcac
aaccgggtggcgtccatcgacaaggtggcggcgagcatccagcgcctggtgcccgaggcc
cgggtggcgtacgcgcacggccagatgaacgagcagcagctcgagaaggtgatggtcgac
ttctgggagaagaacttcgacgtgctggtctccaccaccatcgtcgagtccggcctggac
gtgcccaacgccaacaccctgatcatcgaccgcgccgacacctacggcctgtcccagctg
caccagctgcgcggccgggtgggccgcgggcgcgagcgcgcctacgcctacttcctctac
ccgccggagaggccgctgaccgagaccgcctacgagcggctggccaccgtggcacagcac
accgagaccggcgcgggcatgtacgtggccatgaaggacctggagatccggggcgcgggc
aacatcctgggcgcggagcagtccgggaccatcgcgggcgtgggcttcgacctgtacgtg
cgcatggtcggcgaggccgtagccgaactcaagggcgacccggacgcggccgaggaggtc
gagaccaaggtcgaactgcccatcaacgcctacatcccgcacgactacgtgcctggcgag
cggctgcggttgcagtcctacaagcgcatcgccagcgtcaccagcgaggaggacatcctc
gccgcctacgaggagctcaccgaccgctacggcgccccgcccgaacaggtggacaacctc
atggccgtggcccggttccgggtgctggccaagtccgcgggcctgtcggacgtggtgatg
cagggcaaccagatccgcttcgccccggtggaactgcgcgagtcgcaggagctgcggctg
cggcgcctgtaccccaagaccatccacaaggagacgacccggaccctgctggtgccggtg
cccaagtccggcggcctgggcggcaggcccctgcgggacctggagctgctcaagtggtgc
accgatctggtcaactccatcttcgaacccgccaagcgcaagcccgcgcccaaggaggac
gcctag
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