Nocardiopsis alba: B005_2685
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Entry
B005_2685 CDS
T02218
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nal
Nocardiopsis alba
Pathway
nal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B005_2685 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nal03021
]
B005_2685 (rpoB)
03400 DNA repair and recombination proteins [BR:
nal03400
]
B005_2685 (rpoB)
Enzymes [BR:
nal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B005_2685 (rpoB)
Transcription machinery [BR:
nal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B005_2685 (rpoB)
DNA repair and recombination proteins [BR:
nal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B005_2685 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFR09913
UniProt:
J7L8C5
LinkDB
All DBs
Position
2795684..2799052
Genome browser
AA seq
1122 aa
AA seq
DB search
MQTESFDWLLGNDTWKTRVETARNAGRKDVPEQSGLEEIFEEISPIEDFSGTMSLSFRDH
RFEPPKYSEEECKDKDMTFSAPMFVTAEFINNDTGEIKSQTVFMGDFPLMTAKGTFIING
TERVVVSQLVRSPGVYFDKSVDKTSDKDLFGCKVIPSRGAWLEFEVDKRDFVGVRIDRKR
KQGVTVLLKALGWTTDQILERFGQYESIRNTLEKDPTAGTDDALLDIYRKLRPGEPPTKE
SAQALLENLYFNPKRYDLAKVGRYKINKKLGLDTDYTQGTLTEEDIVATIDYLVRLHAGE
VEKETVFGLRPIETDDIDHFGNRRLRTVGELIQNQVRLGLARMERVVRERMTTQDVEAIT
PQTLINIRPVVASIKEFFGTSQLSQFMDQTNPLAGLTHKRRLSALGPGGLSRERAGFEVR
DVHPSHYGRMCPIETPEGPNIGLIGSLAAYGRVNSFGFVETPYRKVIDGRISEQIDYLTA
DEEDLYVIAQANTPLNADGSFAESGVLVRRKGGEFEQVDTSEVDYMDVSPRQMVSVATAM
IPFLEHDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEYRAATDAGEVILAEKAGVVEDV
TADYVTVMADDGTRKTYRMGKFQRSNQGTCFNQRPIVHEGQRVEVKQVLADGPSTDQGEM
SLGKNLLVAYMSWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITREI
PNVSEEVLADLDDRGIIRIGAEVVDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVR
DTSLKVPHGETGKVIGVRVFSREEGDELAPGVNEMVRVYVAQKRKITDGDKLAGRHGNKG
VIAKILPQEDMPFLEDGTPVDIILNPLGVPGRMNVGQVLEVHLGWLAKNGWVVEGAEEEW
QKSLHAIGASDVEPNSRVATPVFDGLHGDELSGLIKSVRPNKDGNRLINDDGKARLFDGR
TGEPFAEPISVGYKYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYALQELLTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLN
VEVLSSDGMSIEMRDSDEDVFRAAEELGIDLGRREPSSVEEV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaccgagtcgttcgactggctgctgggcaacgacacgtggaagacgcgggtggag
acggcccgcaacgccggccgcaaggacgttccggagcagtccggtctcgaagagatcttc
gaggagatcagtccgatcgaggacttctcgggcacgatgtcgctgtctttccgcgaccat
cggttcgagccgcccaagtactccgaagaggagtgcaaggacaaggacatgaccttctcc
gccccgatgttcgtcacggcggagttcatcaacaacgacaccggtgagatcaagagccag
acggtgttcatgggcgacttcccgctcatgaccgccaagggcaccttcatcatcaacggc
accgagcgtgtcgtcgtttcccagctggtccgctctccgggcgtgtacttcgacaagtcc
gtggacaagacctcggacaaggacctgttcggctgcaaggtcatcccgtcccgcggcgcc
tggctggagttcgaggtcgacaagcgcgacttcgtcggcgtccgcatcgaccgcaagcgt
aagcagggcgtcaccgtcctgctcaaggcgctggggtggaccaccgatcagatcctggag
cgtttcggccagtacgagtcgatccgcaacaccctggagaaggaccccaccgcgggtacc
gacgacgcgctgctggacatctaccgcaagctgcgcccgggggagccgcccacgaaggag
tcggcccaggcgctgctggagaacctgtacttcaaccccaagcgctacgacctggccaag
gtcggtcggtacaagatcaacaagaagttgggtctggacaccgactacacccagggcacc
ctcaccgaagaggacatcgtcgccacgatcgactacctcgtccgcctgcacgcgggtgag
gtcgagaaggagaccgtcttcggcctccgtccgatcgagaccgacgacatcgaccacttc
ggcaaccgccgtctgcgcaccgtcggcgagctcatccagaaccaggtccgtctgggtctg
gcccgcatggagcgcgtcgtccgggagcggatgaccactcaggacgtcgaggcgatcacg
ccgcagaccctgatcaacatccgtcccgtcgtcgcctccatcaaggagttcttcggcacc
tcgcagctgtcccagttcatggaccagaccaacccgctcgcgggtctgacccacaagcgt
cgcctctcggcgctgggtccgggcggtctgtcccgtgagcgcgcgggcttcgaggtccga
gacgtccacccgtcccactacggccgcatgtgcccgatcgagacccctgaaggtccgaac
atcggtctgatcggttcgctcgccgcctacggccgggtgaactccttcggtttcgtggag
accccctaccgcaaggtcatcgacggtcgcatcagcgagcagatcgactacctgaccgcg
gacgaggaggacctctacgtcatcgcgcaggcgaacacgccgctgaacgccgacgggagc
ttcgccgagtcgggtgtgctcgtgcgccgtaagggcggggagttcgagcaggtcgacacc
tccgaggtcgactacatggacgtgtcgccgcgccagatggtgtcggtcgccaccgccatg
atccccttcctggagcacgacgacgccaaccgcgcgctcatgggttccaacatgcagcgc
caggccgtgccgctgctgcgcgccgaggcgcccttcgtcggcaccggcatggagtaccgc
gccgccaccgacgccggtgaggtcatcctcgccgagaaggccggtgtggtcgaggacgtc
accgccgactacgtcaccgtgatggccgacgacggcacgcgcaagacgtaccggatgggc
aagttccagcgctccaaccagggcacctgcttcaaccagcgccccatcgtccacgagggc
cagcgggtcgaggtcaagcaggtcctggccgacggtccgtccacggaccagggcgagatg
tcgctgggcaagaacctcctcgtggcgtacatgtcctgggagggtcacaactacgaggac
gcgatcatcctctcccagcgtctggtgcaggacgacgtcctctcctcgatccacatcgag
gagcacgaggtcgacgcccgtgacaccaagctgggcccggaggagatcacccgcgagatc
cccaacgtcagcgaggaggtcctggccgacctcgacgaccggggcatcatccgcatcggc
gccgaggtcgtcgacggtgacatcctcgtcggcaaggtcactcccaagggtgagaccgag
ctgaccccggaggagcgtcttctgcgcgccatcttcggtgagaaggcccgcgaggtccgc
gacacctctctgaaggtcccgcacggcgagaccggcaaggtcatcggcgtccgcgtcttc
agccgcgaggagggcgacgagctcgcccccggcgtcaacgagatggtccgggtctacgtc
gcccagaagcgcaagatcaccgacggtgacaagctcgccggtcgtcacggcaacaagggc
gtcatcgccaagatcctgccccaggaggacatgcccttcctggaggacggcaccccggtc
gacatcatcctcaacccgctcggtgttcccggtcgtatgaacgtcggccaggtactcgag
gtccacttgggctggctggccaagaacggctgggtggtcgagggggccgaggaggagtgg
cagaagtcgctgcacgcgatcggcgcgtccgacgtcgagccgaactcccgtgtggccacg
ccggtcttcgacggtctgcacggcgacgagctgagcggcctcatcaagtcggtccgcccg
aacaaggacggtaaccgtctcatcaacgacgacggcaaggcccgcctgttcgacggtcgt
accggtgagcccttcgccgagccgatctccgtcggttacaagtacatcctgaagctccac
cacctcgtggacgacaagatccacgcccgctccaccggtccgtactccatgatcacgcag
cagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggaggtctgg
gcgctggaggcctacggtgccgcctacgcgctccaggagctgctcaccatcaagtccgac
gacgtggtgggtcgcgtcaaggtctacgaggccatcgtcaagggcgagaacatccccgag
ccgggcatccctgagtccttcaaggtgctcatcaaggagatgcagtcgctctgtctgaac
gtggaggtgctgtccagtgacggtatgtccatcgagatgcgggacagcgacgaggacgtc
ttccgcgccgcggaagaactgggaatcgacctgggtcggcgtgagccgagcagtgtcgaa
gaggtctaa
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integrated database retrieval system
