Nocardiopsis alba: B005_2686
Help
Entry
B005_2686 CDS
T02218
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nal
Nocardiopsis alba
Pathway
nal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B005_2686 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nal03021
]
B005_2686 (rpoC)
03400 DNA repair and recombination proteins [BR:
nal03400
]
B005_2686 (rpoC)
Enzymes [BR:
nal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B005_2686 (rpoC)
Transcription machinery [BR:
nal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B005_2686 (rpoC)
DNA repair and recombination proteins [BR:
nal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B005_2686 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
AFR06065
UniProt:
J7L3V1
LinkDB
All DBs
Position
2799087..2802965
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMVTWVDTEARERDLQSLEARISVEKQHLEQRRDSTIEERHRKLEAD
LAELEEQGAKGDARRKVREGAEREMRQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDEML
YREMRDRFGKYFRGGMGAQAIQDRLSNFELEEEAEKLRETIRTGKGQKKARALKRLKVVS
AFLNTTNSPMGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARLLMLATNNILKPSDGKPVTMPTQDMIIGLYYLTTERAGAAGEGR
AFRSPAEAIMAYDLGDLDLQAKIRLRISDGAPAPKDWTPPEGWQQGDTYVLETTLGRYLF
NEATPVDYPYVNFQVGKKQVSVLVNDLAENYPKVQVATTLDALKDAGYRWATRSGLTIGI
EDVVAPPQKEEILGNYERKADKIQREYDRGLITDDERRQELTEVWTQATAEVAKNMEENF
PSDNPVWMMVQSGARGNPMQVRQIAGIRGLVSNTKGETIPRPIKSSYREGLSVLEYFIST
HGQRKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTDRSLWHEIGEKNAAGVVVRK
HNVENTGFGRTISEDAVDADGNVVLPALSDTSEQNIDKLVAAGITRVRIRSSLTCEAKIG
VCTTCYGRSMATGKPVDVGEAIGIIAAQSIGEPGTQLTMRTFHMGGSAGQDITHGLPRVQ
ELFEARIPKGVAPISEMEGRIRIDDTEKSRKIVVIPDDGTDEIAYPVPMRAQLLVSDGDH
VKVGQQLIQGAINPHEVLRIQGPRAVQQHLVSEVQEVYKSQGVSIHDKHIEIIVRQMLKR
VNILESGDTELLPGEMVERPKFERINRRVVSEGGQPAAGRPVLLGITKASLATESWLSAA
SFQETTRVLTENAIHGKSDPLLGLKENVIIGKLIPAGTGIPQYRNVRVEPTEEAKASMYS
VSGYEEPSEYTFGQGSGEAVPLEEYDFGPYNR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgtatcggtctcgccacggccgacgacatc
cgccagtggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgaaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacgcacatctggtacttcaagggtgtgccctcccgcctgggctacctgctggacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacatggtcacgtgggtggac
accgaggcccgcgagcgcgacctccagtcgctcgaggcccggatctcggtcgagaagcag
cacctggagcagcgtcgcgactccaccatcgaggagcgccaccgcaagctcgaggccgac
ctggccgagctcgaggagcagggtgccaagggcgacgcgcgccgtaaggtgcgcgagggc
gcggagcgcgagatgcgtcagctccgcgaccgtgcccagcgcgagatcgaccgtctcgac
gaggtctggagccgtttcaagaacctcaaggtccaggacctcgagggcgacgagatgctc
taccgcgagatgcgggaccgcttcgggaagtacttccgcggtggcatgggcgctcaggcg
atccaggaccgcctctccaacttcgagctggaggaggaggccgagaagctccgcgagacc
attcgcaccggcaagggccagaagaaggcccgcgccctgaagcgtctcaaggtcgtctcg
gcgttcctcaacaccaccaacagccccatgggcatggtgctggactgcatcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgtcgcgtcatcaaccggaacaaccgcctcaagcggcttctggacctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggtaaccgtccgctcaag
tcgctgtccgacatgctcaagggcaagcagggacgtttccgtcagaacctgctcggtaag
cgagtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcggtcccgc
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcacccggttctgctcaaccgc
gccccgacgctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgccgaggcccaggccgaggcgcggctgctgatgctg
gccaccaacaacatcctcaagccgtccgacggtaagcccgtgaccatgcccacccaggac
atgatcatcggtctgtactacctgacgacggagcgggccggcgccgcgggcgagggtcgc
gcgttccgctccccggccgaggccatcatggcctacgacctgggagacctggacctacag
gcgaagatccgtctgcggatctccgacggcgctccggcccccaaggactggaccccgccg
gagggttggcagcagggcgacacctacgtcctggagacgaccctgggtcggtacctcttc
aacgaggccaccccggtcgactacccgtacgtcaacttccaggtgggcaagaagcaggtc
tcggtcctggtcaacgacctggccgagaactacccgaaggtccaggtcgccacgaccctg
gacgccctcaaggacgccggttaccgctgggccaccaggtccggtctgaccatcggcatc
gaggacgtcgtcgcgcctccgcagaaggaggagatcctcggcaactacgagcgcaaggcc
gacaagatccagcgcgagtacgaccgtggtctgatcaccgacgacgagcgccgtcaggag
ctcaccgaggtgtggacccaggccaccgccgaggtcgccaagaacatggaggagaacttc
ccctccgacaacccggtgtggatgatggtccagtccggtgcccgtggtaacccgatgcag
gtgcgtcagatcgccggtatccgcggtctggtctccaacaccaagggtgagacgatcccg
cgcccgatcaagtcctcctaccgtgagggcctgtccgtgctggagtacttcatctccacg
cacggtcagcgcaagggtctggccgacaccgccctgcgtaccgccgactcgggttacctg
acccgtcgtctggtggacgtcgcgcaggacgtcatcgtccgcgagatcgactgtggcacc
gaccgttccctctggcacgagatcggtgagaagaacgccgccggtgtcgtggtgcgcaag
cacaacgtcgagaacaccggtttcggccggacgatctccgaggacgcggtggacgccgac
ggcaacgtcgtcctgcccgccctgtccgacacctccgagcagaacatcgacaagctggtc
gccgccgggatcacccgcgtgcgcatccgttcgtcgctgacctgtgaggcgaagatcggt
gtctgcaccacctgctacggtcgctccatggcgaccggtaagccggtggacgtcggtgag
gcgatcggtatcatcgcggcccagtccatcggtgagcccggtacccagctgaccatgcgt
accttccacatgggtggttcggccggtcaggacatcacccacggtctgccccgtgtccag
gagctcttcgaggcccgcatccccaagggtgtggccccgatctccgagatggagggccgg
atccggatcgacgacaccgagaagagccgcaagatcgtcgtcatcccggacgacggcacc
gacgagatcgcctacccggtcccgatgcgtgcccagctcctggtgagcgacggcgaccac
gtcaaggtcggtcagcagctcatccagggcgcgatcaacccgcacgaggttcttcgcatc
cagggcccgcgcgcggtgcagcagcacctcgtgtcggaggtccaggaggtgtacaagtcg
cagggtgtgtccatccacgacaagcacatcgagatcatcgttcgccagatgctcaagcga
gtgaacatcctggagtccggtgacaccgagctgctgcccggtgagatggtcgagcggccc
aagttcgagcggatcaaccgacgcgtggtgtccgagggcggccagcccgccgccggacgt
ccggtcctgctgggtatcaccaaggcctcgctggccacggagtcctggctgtcggcggcc
tccttccaggagaccaccagggtcctcaccgagaacgcgatccacggcaagagcgatcct
ctgctcggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtacgggtatt
cctcagtaccgcaacgttcgggtcgagccgaccgaggaggccaaggcctcgatgtactcg
gtctccgggtacgaggagccgagtgagtacaccttcggtcagggttcgggcgaggccgtg
ccgctggaggagtacgacttcgggccgtacaaccggtaa
DBGET
integrated database retrieval system
