Nautilia profundicola: NAMH_1487
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Entry
NAMH_1487 CDS
T00860
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nam
Nautilia profundicola
Pathway
nam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NAMH_1487 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nam03400
]
NAMH_1487 (mfd)
Enzymes [BR:
nam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NAMH_1487 (mfd)
DNA repair and recombination proteins [BR:
nam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NAMH_1487 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
Helicase_RecD
SecA_DEAD
TsaE
Motif
Other DBs
NCBI-ProteinID:
ACM93597
UniProt:
B9L691
LinkDB
All DBs
Position
1392650..1395574
Genome browser
AA seq
974 aa
AA seq
DB search
MQAKVYEYLQKQKTNIITSAKKEADLTGEVYKYLNIPYVVFPDFRATLGDDLRSFRNEIF
ELNNALFKYYNDNSFFISPYTTILKKLPHKRYYQSIEIEFGDDINLNELKEKLILWGYEH
VDIVSEKGEVSFRGDIFDIWPINLEKPVRVSLFDTEVESIRIFEETSQKSIEEIESFTII
PAIAALEKEEYDQILEKINSSEFSAFYKDFYSLGFWYLEREYLSGFALLNDLTQEIAEYK
EFHKEFNPEIEKAPVIPNGKCKDLSVKNIKEFLNFHKNSNIEIVAKNEVLLKEAGIFEEV
KLRAPLIKWIKSDAHINIHCPDKYIVSLNPPEFEKRKKTNLVLDEIKKGDFVVHEAHGIG
KFNGLKKVEILGKVGEYAEVLYANDDKLLLPVENLNLIEKYIAPGGVIPTLDKLGKGTFA
KKREKIKEKILSMAADIIKLQAQRQLIEPIPLNFEGVREFIAKAPFVHTPDQAKTINDIL
DDFKTKIMDRLLSGDVGFGKTEVAMVASFVVANSGYQVAVIAPTTILVNQHFESFKERFK
DTDIKIAKLDRFTSSKEKKEILEKVKTGEIDIIISTHAGLNIEYKNLGLVIIDEEHKFGV
KQKEKLKEISKNVHTLYMSATPIPRTLNMALSQVKSISTLETAPKGKQSTKTFVKEWNEN
LIKEVILRELRRGGQIFYIYNNIAYIEQKKKELQKILPDLRILVLHAKLTPAQIEKGLVD
FIAGKYDLALTTTIVESGIHIPNVNTVIVENADKFGIADLHQIRGRVGRGKHEGYAYFLV
KNKDELSEDAKKRLLALEENSFLGSGQVLAMRDLEIRGGGNILGAEQSGQIKGVGYSMYV
KMLEDTLKELSGKKVKEDEVEVKLNINAYISDEVVKEDRLRLDLYKRLSMCKTLEDVYEI
EKELVDRFGKLDKPTQNFIEKIKIKVLASQKGIKSISNYGENITFIYNDDKKEFFKAEAK
DDEVILEAIINKLK
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggcgaaagtatatgaatatctgcaaaaacaaaaaacaaatataattacctcagca
aaaaaagaagccgacttaacgggagaagtttataaatacctaaacatcccttacgtggtt
ttccctgatttcagagcgactctcggggatgatttaagaagtttcagaaacgaaatattt
gagcttaacaacgctctttttaaatactacaacgataattcgttttttatatcaccatac
acgacaattctcaaaaaactgcctcacaaaagatattatcaatcaatcgaaatagaattc
ggagacgacattaacctgaatgagcttaaagaaaagctgattttatggggatacgagcat
gtggatatcgtaagcgaaaaaggagaagtcagcttcagaggcgatatattcgacatatgg
cccataaaccttgaaaagcctgtgagggtttcgctttttgatacggaagttgaaagcatc
aggatttttgaagaaacaagccagaaaagtatagaagagatagaatcatttaccataatc
cccgcaatcgccgcactcgaaaaagaagaatacgaccaaatcttagaaaaaatcaattca
agtgaattttcggcgttttacaaagacttttattcattagggttttggtatcttgagagg
gaatatttaagcggttttgcacttttaaacgacctcacacaggagattgcggaatataaa
gagtttcataaagaattcaaccctgaaatcgaaaaagcccccgttatacctaacggcaaa
tgtaaagatttgagtgttaaaaacataaaagaattcctaaatttccacaaaaactcaaac
atcgaaatcgtcgccaaaaacgaagtattattaaaagaagcgggaatttttgaagaggtt
aaactaagagctcctcttatcaaatggataaaaagcgatgcacatataaacatacactgc
ccggataaatacatagtctctctaaaccctcctgaatttgaaaaaagaaaaaaaacaaac
ctcgttctcgatgaaatcaaaaaaggcgatttcgtagtacacgaagcccacggtatcggt
aaatttaacggtcttaaaaaagtagaaatcctcggcaaagtcggagaatacgccgaagtt
ctctacgccaacgacgataaacttttactgcctgtggagaacctgaatctaatcgaaaaa
tacatagcccccggaggcgtaatccctacgcttgataaactcggaaaaggcacatttgcc
aaaaaacgtgaaaaaatcaaagaaaaaatcctctcaatggcggcggacatcattaaactt
caggcccagcgtcagctaattgagccgattcctcttaattttgaaggagtcagggaattt
attgcaaaagctccgtttgtgcacacacctgaccaggcaaaaacaattaacgacatcctt
gatgatttcaaaaccaaaatcatggacaggctcctaagcggtgatgtgggattcggtaaa
acggaagttgcgatggttgcgagttttgtagtggcaaactcaggctatcaggtggcagta
atagcacctacgacaatcctcgtaaaccagcatttcgaaagttttaaagaaagattcaaa
gacactgatataaaaatagcaaaactcgacagattcacttcaagtaaagagaaaaaagag
atccttgaaaaagtaaaaacgggagaaattgacatcatcatctcaacccacgcgggactc
aacatcgaatacaaaaacctgggacttgtgataatagacgaagagcataaattcggcgta
aaacaaaaagaaaaactaaaagaaatatccaaaaacgtgcataccctttatatgtctgcc
acacctattccgagaaccctcaacatggctctttcacaggtcaaatcaatctcaacactc
gaaacggctccaaaaggcaaacagtccaccaaaacgtttgtcaaagaatggaatgaaaac
cttattaaagaagttattttaagagagcttagacgcggcggacagatcttttacatttac
aacaacatcgcatacatcgaacagaagaaaaaagagcttcaaaaaatactgccggatctc
agaatcctggtgcttcacgccaaactcacccctgcacagatcgaaaaaggacttgtggat
ttcatagccggcaaatacgacctcgccctcacaaccacaatagtggaaagcggtatccac
atccctaacgtaaacaccgtaatcgtagaaaacgcagacaaattcggtatagcggacctg
caccagataagaggacgggtaggaagaggaaaacacgaaggatacgcttactttttagtc
aaaaacaaagacgaacttagcgaagatgccaaaaaaaggctccttgcacttgaagaaaac
tcattccttggaagcggacaggttcttgccatgagagacctcgaaataagaggcggcgga
aacatactcggtgcagaacagtccgggcagattaaaggtgtgggatactctatgtatgta
aaaatgcttgaagacaccctaaaagagctaagcggcaaaaaggtaaaagaagacgaagtt
gaagtaaaactaaatatcaacgcgtatatctcggacgaagtggtaaaagaagacagatta
aggcttgatttatataaaaggctctcaatgtgcaaaacgcttgaggatgtatatgaaata
gaaaaagagcttgtcgacagattcggaaaactcgacaaaccgacccaaaacttcatcgaa
aaaataaaaataaaggttttagcttcccaaaaaggcattaaatcgatttcaaactacggt
gaaaacattacattcatctacaatgacgacaaaaaagagttctttaaagcagaagccaaa
gatgatgaagtaatacttgaagccatcattaataagcttaaataa
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