Neisseria animaloris: NCTC12227_00191
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Entry
NCTC12227_00191 CDS
T06907
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nani
Neisseria animaloris
Pathway
nani02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nani00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC12227_00191 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nani03021
]
NCTC12227_00191 (rpoD)
Transcription machinery [BR:
nani03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC12227_00191 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
SPO22
DUF2250
DUF5660
CdaS_N
Motif
Other DBs
NCBI-ProteinID:
VEJ20484
UniProt:
A0A1X3CMA1
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All DBs
Position
1:complement(227813..229768)
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AA seq
651 aa
AA seq
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MSIKNTNDNEYEEQNDNRPLTLEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDADQ
IDNIVSMISGLGIQVTEQAPDAEEMLMSDNTAGLTDDDAVAEAEAALSSVDSEFGRTTDP
VRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIKRIREDEIK
VDEVVEAIIDPNEVLLNELGLGHLETNTPIDSGNDSDNDDGDSDDDSDSDDESSAEAIAA
TNLEELKQKVLEHFERIQADYDKMIAALNKHDSRHAAYLEHRDAIASKLLEVRFATRQIE
SLSSSLRERVENIRKLEREIRDICLERVHMDRDYFISYFLPEITRLDWVEEEVGKGKVWS
NALDRFRHAIIEKQTALSDMETETRISIDELKEINKNMVISEKETAAAKQEMIQANLRLV
ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISM
ETPIGDDDDSHLGDFIEDVNNVAPADAAMYSSLHEVTKEVLESLTPREAKVLRMRFGIDM
NTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLDSEENKQ
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcaaaaacactaacgacaacgaatacgaagaacaaaacgacaaccgcccgctt
acgctcgaagagcagcgggcgcgtttgcgacagctcattatcatgggcaaagaacgcggt
tacatcacctattccgaaatcaatgacgccttgcccgacgacatgtcggatgccgatcag
atcgacaacattgtcagcatgatttccggtttaggcatccaagtaaccgaacaagcgccc
gatgccgaagaaatgttgatgagcgacaacaccgccggattgaccgacgatgatgccgtt
gcggaggccgaagccgccctttccagcgtagacagcgaattcggccgcaccaccgaccct
gtgcgcatgtatatgcgggaaatgggccaagtcgacctgctgacccgcgaagatgaaatc
atcatcgccaaaaaaatcgaaaatgccctgaaaaacatggtacaggctatctctgcctgc
cccggttcgattgccgaaattttggagctgatcaaacgcatccgcgaagatgaaatcaaa
gtagacgaagttgttgaagccatcatcgatcccaacgaggtattgctgaacgaattgggc
ttgggtcatctggaaaccaatacccccatcgacagcggcaatgacagcgataacgatgac
ggcgatagcgatgatgacagcgatagcgacgacgaaagcagtgccgaagccattgccgcc
accaatttggaagaattgaagcaaaaagtgctggaacatttcgagcgtatccaagccgat
tacgacaaaatgattgccgccctcaacaagcacgacagccgccatgccgcctatttggag
caccgtgatgccattgcctccaaattactggaggtacgcttcgccacccgccaaatcgaa
agcttgagcagcagcctgcgtgaacgtgtcgaaaatatccgcaaactggaacgtgaaatc
cgcgatatctgtctcgaacgtgtacatatggatcgcgactacttcatcagctacttcctg
ccggaaatcacgcgtttggactgggtggaagaagaagtgggcaaaggaaaagtatggagc
aacgccctcgaccgtttccgccacgccatcatcgagaagcaaaccgctctttccgatatg
gaaaccgaaacccgtatttccatcgacgagttaaaagagatcaataaaaacatggttatc
agcgagaaagaaaccgctgccgccaagcaggaaatgattcaggccaacttgcgtttggtg
atttcgattgcgaaaaaatacaccaaccgcggcctgcagtttctcgatttgattcaggaa
ggcaatatcggcctgatgaaagcggtagataaattcgaataccgccgcggctataagttc
tcaacctacgccacttggtggatccgccaagccatcacccgctcgattgccgaccaagcg
cgtaccatccgtattccggttcacatgattgaaaccatcaacaaaatgaaccgcatttcg
cgccagtatctgcaagaaacgggcgaagagccggattcagccaaactggccgaactgatg
gaaatgccagaagataaaatccgcaagatcatgaaaatcgccaaagagccgatttctatg
gaaacccccatcggtgatgacgacgattcgcatttgggcgattttatcgaagatgtgaac
aatgttgccccggcagatgcagccatgtattcgagcctgcacgaagttaccaaagaagtg
ctggaaagcctgactccgcgtgaagcaaaagtattgcgtatgcgcttcggtatcgacatg
aataccgaccacacgttggaagaagtgggcaagcagtttgatgtaacacgcgagcgtatc
cgccagattgaagcgaaagccttgcgtaaactccgccatccgacccgtagtgaccgcttg
cgcagcttcttggatagcgaagaaaacaaacagtaa
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