Nannocystis poenicansa: O0S08_28980
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Entry
O0S08_28980 CDS
T08663
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nann
Nannocystis poenicansa
Pathway
nann03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O0S08_28980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nann03400
]
O0S08_28980 (mfd)
Enzymes [BR:
nann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O0S08_28980 (mfd)
DNA repair and recombination proteins [BR:
nann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O0S08_28980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WAS90248
LinkDB
All DBs
Position
complement(7537104..7540817)
Genome browser
AA seq
1237 aa
AA seq
DB search
MPGRPVSNAPLRGGPVVPGDPLERVLTALREGSDVRLVGAVGGFRGYALAMAASRVEAPV
FTVAPDEASARALAGDAAFFLGAPLRDASDGPVLVVPEIDTSPYADAAADPRTMALRLAA
LYRLVDRHSEPPKLIVASVRSLRRRVIPPPQFQELCTRWGEGDELPREAAIAALQRAGYT
RVDVVEDPGTYAVRGGVIDLFVGCSRFPTRVEFDDDLIERLRLFDPESQRSLRPVTSVSI
HPVRETVATTAASLRARVLALADAALAPSSKSRQIVDNLEQGLEFFGVEALTPIFHDAMA
PLWDYLPRGTRWVIEEPDALLQVAEEQAQEAAEQYGRAQAERGVVAPPEQFFVPDADLGR
RLRAAPVVLSRLLVEGEAAESPESGDRPEDAGPKEHAPKGMSKKAAEERPAVWLQVGSNK
PLRTALEASRADRSGEAMRPLVDQIRALQAETPTAAGDLGELLPWTVLLVVPGRAQVDRL
IGALRGHGLAPEALSPEQAPIELRAPTTGTRVQVAVGELSEGFDYPAARLLVLSEFDLFG
KSTRRAQSRRRTGLSSLSQLGVGDYVVHLQHGVGRYAGLVQLQLGGAPGDYVQLEYAGGD
KLYLPVYRLSEIERYVAAEGKPPKLDKMGGSTFLVKANKVKTEVRQMAEELLQIYAQRES
TPGTAFPGPDEYDQSFADSFPFQETPDQETAIDAVQGDLGRARPMDRLICGDVGFGKTEV
ALRAAFRVAQNGRQVAVLAPTTVLVQQHGITFRERLAPFDLRVEVLNRFSSDRQQKRVIE
GIAAGEVDVVVGTHRLLGKDVRFKDLGLLVIDEEQRFGVAQKERFKKFKAQVDVLTMSAT
PIPRTLHMSLLGLREISMIRTPPIDRLAVRTAIVRIGDAVIEEGITRELARGGQVFYVVP
KILGIEEHAVRIRELVPHARVLVAHGQMPEEMLERTMLEFVEHRADVLVSTTIIESGLDI
PRANTMFIAHAEQFGLAQLYQLRGRVGRSKQRAHCYLMVQALERLSPEARRRLEAIQRHA
ELGSGFGVAVHDLEIRGAGELLGARQSGQIQAIGFDAYARILQEAVAELRGEPILRETDP
EIAFDTPAYLPEAYVRDVGQRLDLYRRLSAARDRDAVEDVMSEITDRYGEAPLEAEHLGL
VMICKTYGRRLGALAVELKGTRLAVRLGPDTPLSGETAGRLNATTHGKFKLQGDRVVATV
PEARGPDRRTQLKVAVAALAELTQIAESKPVAPAKKR
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggtcgtcctgtctccaacgccccgctgcgcgggggtcctgtcgtccctggcgat
ccgctggagcgcgtgctcacggcgctgcgcgagggcagcgacgtgcggctcgtcggcgcg
gtcggcggcttccgcggctacgcgctggcgatggcggccagtcgggtcgaggcgccggtg
ttcaccgtggccccggacgaggcgagcgcgcgggcgctggcgggcgacgcggcgttcttc
ctcggtgccccgctgcgggacgcgagcgacgggccggtgctggtggtccccgagatcgac
acctcaccgtacgccgacgccgcggccgacccgcggaccatggcgctgcggctggcggcg
ctgtaccgcctggtcgatcggcacagcgagccgccgaagctgatcgtcgccagcgtccgt
tcgctgcgccggcgggtgatcccgccgccgcagttccaggagttgtgcacgcgctggggc
gagggcgacgagctgccgcgcgaggccgcgatcgcggcgctgcagcgggccggctacacc
cgcgtcgacgtggtcgaggacccgggcacctacgcggtgcgcggcggcgtgatcgacctg
ttcgtcggctgctcgcgcttcccgacgcgggtcgagttcgacgacgacctgatcgagcgc
ctgcgcctgttcgaccccgagtcgcagcgcagcctgcggccggtcacctcggtctcgatc
cacccggtgcgggagacggtcgccaccaccgcggcctcgctgcgcgcgcgggtgctggcg
ctggccgacgccgccctggcgccgtcgagcaagagccggcagatcgtcgacaacctcgag
cagggcctcgagttcttcggcgtcgaggcgctgaccccgatcttccacgacgcgatggcg
ccgctgtgggactacctgccgcgcggcacccggtgggtcatcgaggagcccgacgcgctg
ctgcaggtcgccgaggagcaggcccaggaggccgcggagcagtacggccgcgcccaggcc
gagcgcggcgtggtcgccccgcccgagcagttcttcgtccccgacgccgacctcggccgc
cgcctgcgcgccgccccggtggtgctgtcgcggctgctggtcgagggcgaggcggcggag
tctcctgaatcaggggacaggcccgaagatgcaggtccgaaggagcatgcccccaagggc
atgtccaaaaaggcagccgaggagcggccggcggtgtggctgcaggtcggctcgaacaag
ccgctgcggaccgcgctcgaggcgtcgcgggccgaccgcagcggcgaggcgatgcgcccg
ctggtcgaccagatccgggcgctgcaggccgagacgccgacggccgccggcgacctcggc
gagctgctgccgtggacggtgctgctggtggtgcccgggcgggcccaggtcgaccgcctg
atcggggcgctgcgcggccacgggctcgccccggaggcgctctcgccggagcaggcgccg
atcgagctgcgggcgccgacgacgggcacgcgggtgcaggtcgccgtcggcgagctcagc
gagggcttcgactacccggccgcgcgcctcctggtgctgtcggagttcgacctgttcggc
aagtcgacgcggcgggcccagtcgcggcggcgcaccgggctgtcgagcctgtcgcagctc
ggggtcggcgactacgtggtgcacctgcagcacggcgtcggccgctacgcggggctggtg
cagctgcagctgggcggggcgcccggcgactacgtgcagctcgagtacgcgggcggcgac
aagctgtacctgccggtctaccgcctgtcggagatcgagcgctacgtggccgccgagggc
aagccgccgaagctcgacaagatgggcggcagcaccttcctggtcaaggccaacaaggtc
aagaccgaggtgcggcagatggccgaggagctgctgcagatctacgcccagcgcgagtcg
acccccggcaccgcgttccccggccccgacgagtacgaccagtcgttcgccgacagcttc
ccgttccaggagacgcccgaccaggagaccgcgatcgacgcggtccagggcgacctcggc
cgcgcgcgcccgatggaccgcctgatctgcggcgacgtcggcttcggcaagaccgaggtc
gcgctgcgggcggccttccgcgtggcccagaacggcaggcaggtcgcggtgctggcgccg
acgacggtgctcgtgcagcagcacggcatcaccttccgcgagcgcctggcgccgttcgac
ctgcgcgtcgaggtgctgaaccgcttcagcagcgaccgccagcagaagcgcgtgatcgag
ggcatcgccgccggcgaggtcgacgtggtggtcggcacccaccgcctgctcggcaaggac
gtccgcttcaaggacctcggcctgctcgtcatcgacgaggagcagcggttcggggtggcc
cagaaggagcggttcaagaagttcaaggcccaggtcgacgtgctgacgatgtcggccacg
ccgatcccgcgcacgctgcacatgtcgctgctcggcctgcgcgagatcagcatgatccgc
accccgccgatcgaccgcctggccgttcggacagccatcgtccggatcggcgacgcggtg
atcgaggagggcatcacccgcgagctggcccgcggcggccaggtgttctacgtcgtgccg
aagatcctcggcatcgaggagcacgcggtccggatccgcgagctggtcccgcacgcccgc
gtcctcgtcgcccacggccagatgccggaggagatgctcgagcgcaccatgctcgagttc
gtcgagcaccgcgccgacgtgctggtgtcgacgacgatcatcgagagcggcctcgacatc
ccgcgcgccaacacgatgttcatcgcccacgccgagcagttcgggctggcccagctgtac
cagctgcgcggccgcgtcggccgcagcaagcagcgcgcccactgctacctgatggtgcag
gcgctcgagcggctgtcgcccgaggcgcgccgccggctcgaggcgatccagcgccacgcg
gagctcggctcgggcttcggcgtggcggtccacgacctcgagatccgcggcgccggcgag
ctgctgggggcgcgccagagcgggcagatccaggcgatcggcttcgacgcctacgcccgg
atcctgcaagaagcggtggccgagctgcgcggcgagccgatcctgcgggagaccgatccg
gagatcgcgttcgacaccccggcctacctgcccgaggcgtacgtgcgcgacgtcggccag
cgcctcgacctgtaccgccggctgtcggccgcgcgcgaccgcgacgccgtcgaggacgtg
atgagcgagatcaccgaccgctacggcgaggcgccgctcgaggcggagcacctcggcctg
gtgatgatctgcaagacctacggccgccgcctcggcgcgctcgcggtcgagctcaagggc
acgcgcctggcggtccgcctcgggcccgacacgcccctgtccggagagacagccggccgg
ctgaacgcgaccacccacggcaagttcaagctgcagggcgaccgcgtggtcgcgacggtc
cccgaggcgcgcgggcccgaccgccgcacgcagctcaaggtcgcggtcgcggcgctggcc
gagctgacgcagatcgccgagagcaaaccggtcgcgccggcgaaaaagcggtag
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