Nocardioides anomalus: G5V58_14200
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Entry
G5V58_14200 CDS
T07000
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nano
Nocardioides anomalus
Pathway
nano03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nano00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G5V58_14200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nano03400
]
G5V58_14200
Enzymes [BR:
nano01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G5V58_14200
DNA repair and recombination proteins [BR:
nano03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G5V58_14200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QIG43763
UniProt:
A0A6G6WF30
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All DBs
Position
complement(2823676..2824689)
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AA seq
337 aa
AA seq
DB search
MGRVASSGGWVTAGPYDRTSGYHSSVTDIPQPALATLSHERFWADGWVYERKLDGQRCLA
VRTGRGTRLYSRSGRDVTVAFPEIAEALEEQASTDFVVDGEVVAFEGSRTSFARLQPRIH
VSSADKARRSGVPVFFYVFDVLRADGEDLRGEPLLARKRRLRALLTFDGPIRYTPHRRQG
GEEYFAGACRKGWEGLIAKRADAAYATGRTDRWLKFKCEAGQELVVVGWTDPEGSRVALG
ALLLGYHEGDDLVYAGKVGTGFSEAVLRDLHARLGPLEVDPSPCTQGALPRKGVHWARPE
LVAQVAFTEWTRTHQLRHPRFLGLREDKAAAEVVRET
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggtggcgtcctcgggaggctgggtcacggcaggaccctacgaccggacgagc
gggtaccacagcagcgtgaccgacatcccgcagccggcgctggcgacgctgtcgcacgag
cgcttctgggccgacgggtgggtctacgagcgcaagctcgacggccagcgctgcctggcc
gtgcgcaccggccggggcacccggctctactcccgctcgggccgcgacgtgacggtggcg
ttcccggagatcgcggaggcgctggaggagcaggcgtcgaccgacttcgtggtggacggt
gaggtggtggccttcgagggctcgcgcacgtcgttcgcccggctccagccgcgcatccac
gtgagcagcgcggacaaggcgcgccgcagcggcgtcccggtcttcttctacgtcttcgac
gtgctgcgcgcggacggcgaggacctgcgcggcgagccgctgctggcccgcaagcggcga
ctgcgcgcgctgctcaccttcgacggcccgatccgctacacgccgcaccgcaggcagggg
ggcgaggagtacttcgccggggcctgccgcaagggctgggaggggctgatcgccaagcgc
gcggacgcggcgtacgccaccggccgcaccgaccgctggctcaagttcaagtgcgaggcc
ggccaggagctggtcgtcgtcggctggaccgacccggagggctcgcgggtcgcgctgggt
gcgctgctgctcggctaccacgagggcgacgacctggtgtacgccggcaaggtcggcacc
ggcttctccgaggcggtgctgcgcgacctgcacgcgcggctcggcccgctcgaggtcgac
ccgtcgccgtgcacccagggcgcgctcccgcgcaagggtgtgcactgggcgcggcccgag
ctggtggcgcaggtcgccttcaccgagtggacgcggacccaccagctgcggcacccgcgc
ttcctcgggctccgcgaggacaaggccgcggccgaggtggtgcgggagacgtga
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