Nocardioides anomalus: G5V58_17805
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Entry
G5V58_17805 CDS
T07000
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nano
Nocardioides anomalus
Pathway
nano03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nano00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G5V58_17805 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nano03400
]
G5V58_17805 (mfd)
Enzymes [BR:
nano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5V58_17805 (mfd)
DNA repair and recombination proteins [BR:
nano03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G5V58_17805 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
AA_kinase
Motif
Other DBs
NCBI-ProteinID:
QIG44383
UniProt:
A0A6G6WGV1
LinkDB
All DBs
Position
complement(3528847..3532401)
Genome browser
AA seq
1184 aa
AA seq
DB search
MTLSGLSDAVLADPTLDEAIADARGGAVRALDLTGPQAVRPFVVDGLVRAGRTVLAVTAT
AREAEDLVEELGSLIDPERVALYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDAAHGA
LSVVVAPVRSVLQPQVKGLGDLEPVELVPGQSVAMDDVVRRLADAAYSRVDLVERRGEFA
VRGGIVDVFPPTEEHPLRVEFWGDDVEEIRSFSVADQRAHEAVDRLWAPPCRELLLTDEV
RRRAWELGERHPQLVELTDKISSGIAVEGMESLTPVLVDEMELLVDLLPEQTHVLVLDPE
RVRRRAHDLVATSEEFLGASWAAAASGGEAPIDLGAASYRELGDVRAHVLAEGQSWWTVS
PFGLADDADTLVPDADTAGVPTRTLAMQAADAYRGDVDRAFKELAELHAAGFRCVVVHPG
HGPAQRTVEALGERDVPARLVDLLEDAPPADVVTVTCGSLTHGFVDEHNRLVLLTGEDIS
GQKATSTRDMRKMPARRKRQIDPLELAPGDYVVHEQHGVGRFVEMKQREVGGAVREYLVL
EYGASKRGGPADRLYVPADALDQVTRYVGGEQPSLDRLGGADWNKRKGRARKAVREIAAE
LIKLYAARQATQGYAFGPDTPWQRELEDAFPFTETPDQLTTVDEVKGDMQKVVPMDRLIC
GDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLVTQHLSTFTERMTGFPVVLRALSRFQ
SDKEAREVMAGMADGTIDIVVGTHRLLNPDVRFKDLGLIIVDEEQRFGVEHKEQMKRLRT
SVDVLAMSATPIPRTLEMAITGIREMSTITTPPEERHPVLTYVGAYEDRQVTAAVRRELL
REGQVFYIHNRVQSIEKAAAKIRELVPEARVATAHGQMHEKALEQVMLDFWEKRFDVLVC
TTLVESGLDVSNANTMIIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPAEKPLTETAH
ERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVSEFR
GDQEPELNEVRIELPVDAHLPHDYIPSERLRLEMYKRLAEVRADDDVDLLLEELKDRYGE
PPVEVQSLLLVARFRARARAAGVGEVTLAGKNVRFAPVSLPESRVVRLQRLYPKSIVKAP
VETILVPRPHVGGVMGKPLDGIGLLQWAHEVIDAVIDPAPVVAS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtgaccctctccggactctccgacgccgtcctcgccgaccccaccctcgacgaggcgatc
gccgatgcgcgcgggggcgcggtgcgggcgctcgacctcaccgggccgcaggcggtccgg
ccgttcgtggtcgacggcctggtgcgggccggccggacggtgctggctgtgacggcgacc
gcgcgcgaggccgaggacctggtcgaggagctggggtcgctcatcgaccccgagagggtg
gccctctacccgagctgggagacgctcccgcacgagcggctcagcccgcgcagcgacacg
gtcgggcggcgcctggcggtgctgcggcgactggcgcacccggacgcggcgcacggcgcg
ctgtcggtcgtggtggcgccggtgcgctcggtgctgcagccgcaggtcaaggggctgggc
gacctcgagccggtcgagctggtgccgggccagagcgtggccatggacgacgtggtccgg
cgactggccgacgcggcgtactcccgggtcgacctggtcgagcggcgcggtgagttcgcg
gtccgcggcggcatcgtcgacgtcttcccgccgaccgaggagcacccgctgcgcgtggag
ttctggggtgacgacgtcgaggagatccgctcgttctcggtggccgaccagcgcgcgcac
gaggcggtcgaccggctctgggcgccgccgtgccgcgagctgctgctcaccgacgaggtg
cgccggcgcgcgtgggagctgggcgagcggcacccgcagctggtcgagctgaccgacaag
atcagctccggcatcgcggtcgagggcatggagtcgctcaccccggtgctggtcgacgag
atggagctgctcgtcgaccttctccccgagcagacccacgtgctggtcctcgaccccgag
cgcgtacgccgccgcgcgcacgacctggtggcgaccagcgaggagttcctcggcgccagc
tgggcggccgcggcgagtggcggcgaggccccgatcgacctcggcgcggcgtcgtaccgc
gagctcggcgacgtccgcgcccacgtcctggccgagggccagagctggtggacggtcagc
ccgttcggcctggccgacgacgccgacaccctggtgcccgacgccgacacggccggcgta
ccgacccgcaccctggccatgcaggccgccgacgcctaccgcggcgacgtggaccgggcg
ttcaaggagctcgccgagctgcacgccgctggcttccgctgcgtcgtcgtccacccgggc
cacggcccggcccagcgcaccgtcgaggcgctcggcgagcgcgacgtgccggcccggctg
gtcgacctgctcgaggacgccccgcccgccgacgtcgtcaccgtcacctgcggctcgctg
acccacggcttcgtcgacgagcacaaccggctggtcctgctcaccggcgaggacatctcc
ggccagaaggccacctccacgcgcgacatgcgcaagatgccggcgcgccgcaagcgccag
atcgaccccctcgagctggcgcccggcgactacgtcgtgcacgagcagcacggcgtcggc
cgcttcgtggagatgaagcagcgcgaggtcggcggagcggtccgcgagtacctcgtcctg
gagtacggcgcctccaagcgcggcggacccgccgaccgcctctacgtcccggccgacgcg
ctcgaccaggtcacgcgctacgtcggcggcgagcagccgtcgctggaccggctcggggga
gccgactggaacaagcgcaagggccgcgcccgcaaggccgtgcgcgagatcgcggccgag
ctcatcaagctgtacgccgcgcgccaggccacccagggctacgccttcggccccgacacc
ccgtggcagcgcgagctcgaggacgccttccccttcaccgagacccccgaccagctgacc
acggtcgacgaggtcaagggcgacatgcagaaggtcgtccccatggaccgcctcatctgc
ggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggccgtccag
gagggcaagcaggtcgccgtgctggtgccgaccacgctgctggtcacccagcacctgtcg
accttcaccgagcggatgaccggcttccccgtcgtgctccgcgcgctgagccgcttccag
tccgacaaggaggcgcgcgaggtgatggccggcatggccgacggcaccatcgacatcgtc
gtcggcacccaccggctgctcaacccggacgtccgcttcaaggacctcgggctgatcatc
gtcgacgaggagcagcgcttcggcgtggagcacaaggagcagatgaagcgcctgcgcacc
tcggtcgacgtcctggccatgagcgccaccccgattccccgcaccctggagatggcgatc
accggcatccgcgagatgtccacgatcaccaccccgcccgaggagcggcacccggtcctg
acctacgtcggcgcctacgaggaccgccaggtcaccgccgccgtgcgccgcgagctgctg
cgcgagggccaggtcttctacatccacaaccgcgtgcagagcatcgagaaggccgcggcc
aagatccgcgagctcgtccccgaggcccgggtggccaccgcgcacggccagatgcacgag
aaggcgctcgagcaggtcatgctcgacttctgggagaagcgcttcgacgtcctcgtctgc
accaccctcgtggagtccggcctcgacgtctccaacgccaacaccatgatcatcgagcgc
gccgacaccctcggcctgtcccagctgcaccagctgcgtggccgcgtcggccgctcgcgg
gagcgcgcgtacgcctacttcctctaccccgccgagaagccgctcaccgagaccgcccac
gagcgcctggccaccctggcccagcactccgacctcggcggcggcatggccatcgccatg
aaggacctcgagatccgcggcgccggcaacctcctcggcggcgagcagtccggccacatc
gccgacgtcggcttcgacctctacgtccgcctcgtcggcgaggccgtgagcgagttccgc
ggcgaccaggagcccgagctcaacgaggtccgcatcgagctccccgtcgacgcccacctc
ccgcacgactacatccccagcgagcgcctgcggctcgagatgtacaagcgcctcgccgag
gtccgcgccgacgacgacgtcgacctgctgctcgaggagctcaaggaccggtacggcgag
ccgcccgtcgaggtgcagtcgctgctcctcgtcgcgcggttccgggcccgcgcccgggcc
gccggcgtcggggaggtcacgctcgcgggcaagaacgtccgcttcgcgccggtcagcctg
cccgagtcgcgggtcgtgcggctgcagcggctctacccgaagtcgatcgtcaaggcgccc
gtggagacgatcctcgtgccgcggccgcacgtggggggcgtgatggggaagccgctcgac
gggatcgggttgctgcagtgggcgcatgaggtgatcgatgcggtgatcgatccggctcct
gtcgttgcgtcgtag
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