Nitrospirillum amazonense: Y958_29475
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Entry
Y958_29475 CDS
T04935
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nao
Nitrospirillum amazonense
Pathway
nao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Y958_29475 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nao03400
]
Y958_29475 (ligD)
Enzymes [BR:
nao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Y958_29475 (ligD)
DNA repair and recombination proteins [BR:
nao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Y958_29475 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASG25102
UniProt:
A0A248K2D7
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All DBs
Position
4:313423..315462
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AA seq
679 aa
AA seq
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MDTVGRDTTDDEVLDHLPEAPSDAPAKTPPSRAHIPPPAFVEPALATLVDSPPEGPDWLF
EAKFDGYRAVVAVSGQEVRIHTRSGLDWTDRFPTIVRALVALDLPPVLLDGEIVALDSRG
LSNFSTLQRAMKDDQAALSYYVFDLLAEAGRDWGPRPLVARKARLAALLGEAGKTGPVFY
TDHVMGGGAGLLATLCEQGFEGIIAKRANGPYQPGRCHDWLKVKCGNRQEFVIVGWSPST
HGRAFASLLLGLREDGALRYAGRVGSGFDADTQAGLEARLHALARKAPTVAVDSVPPAIA
REARWVKPELVAEIAFAGFTGDRLVRQGRFMGLRADKPAGAVVLERAEHVGQAVGQPVGQ
AVKEGGSPMGGVALTHPERVLDPVSGLTKQGLADYLETVAPRMLPYAAGRLLSLLRCPEG
TEQACFFQRHAGAGTPSPWRRKAVKEKDGRQIDYFYLTDAAGLRAAAQMGVLELHLWGSP
VRKLESPDRLVFDLDPDAGLPFAKVKAAAVAMRDVLAALDLASFPLLTGGKGVHVVAPLG
PGAAGGRRQWPVVAAFAKAVAEQLVEANPDAYVATMNKARRQGRIFIDHFCNTRGSSAVA
PYSTRAKPARGGGGTPIACPVSWEELAKVERADFHTTADAPALMRRVDPWARYFELEQDL
GAAACRVLGVKVGAGAYNG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggataccgtgggccgcgacaccaccgatgacgaggtgctggaccatctgcccgaggcg
ccgtccgacgcaccggccaagacgccgccgtctcgcgcgcacattccgccccccgctttc
gtcgagccggcgctggccaccttggtcgacagcccgccggagggaccggactggctgttc
gaggccaagttcgacggctatcgcgccgtggtggcggtgtcaggccaggaggtacgcatc
cacacccgctccggcctggattggaccgatcgtttccccaccatcgtacgggccctggtg
gctcttgacctgccgccggtgttgctggatggcgagatcgtggccctggattctcgcggg
ctcagcaacttcagcaccctgcagcgcgccatgaaggacgaccaggctgccctcagctac
tacgtcttcgacctgctggcggaggctgggcgcgactggggaccccggccgctggtggcg
cgcaaggcgcggctggccgccctgttgggggaggcgggcaaaaccggcccggtcttttac
accgaccatgtgatgggcggcggcgccggcctgttggccaccctgtgcgaacagggattc
gagggcatcatcgcgaagcgggccaacgggccataccaaccagggcggtgccacgactgg
ctgaaggtgaagtgcggcaaccgtcaggagtttgtcatcgtcggctggtcgccctccacc
cacgggcgggccttcgcctccctgctgctgggcctgcgcgaggatggcgccctgcgctat
gccggccgggtgggtagcggcttcgacgccgacacccaggcagggttggaggcgaggctg
catgcgctggcgcgcaaggccccgacggtggcggtggacagcgtgccccccgccatcgcc
cgggaggcgcgctgggtgaagcctgagctggtggcggaaatcgcctttgcggggtttacc
ggcgaccggctggtgcgccagggccgtttcatgggcctgcgcgccgacaagccagccggg
gccgtggtgctggaaagggcggaacatgtggggcaagcggtggggcaacccgtggggcaa
gcggtgaaggaagggggatcgcccatgggcggtgtcgctctgacccatccggaacgggtg
ttggaccccgtctccggcctgaccaagcagggcttggccgactatctggaaacggtggcg
ccgcgcatgctgccctatgctgctggccggctgttgagcctgctgcgctgtccagaaggg
acggaacaggcctgcttcttccaacgccatgcgggggccggcacgccctcgccatggcgg
cgcaaggcggtgaaggagaaggacggcaggcagatcgactatttctacctgacggacgcg
gcggggctgcgggcggcggcccagatgggcgtgctggaactgcacctgtggggcagcccg
gtgcgcaagcttgaatcgcccgaccggctggtgttcgacctggaccccgacgccggtctt
cccttcgccaaggtcaaggcggcggcggtggccatgcgcgatgtgctggcggcgctggac
cttgccagcttccccctgctgacgggcggcaagggcgtgcatgtcgtggccccgctgggt
cccggcgctgccggtggtcgtcgccagtggccggtggtggccgccttcgccaaggccgtg
gcggaacaactggtggaggcgaatcccgacgcctacgtcgccactatgaacaaggcccgg
cgccagggtcgcattttcatcgatcatttctgcaatacgcggggttcctcggccgtcgcc
ccctactcgacccgggccaagcccgcgcgcggtggcggtggcacccccatcgcctgcccg
gtcagctgggaggaattggccaaggtggaacgggcggacttccacaccaccgccgatgcc
ccggccctgatgcgccgcgttgatccctgggcccgctattttgagctggagcaggatctg
ggcgccgcagcctgccgcgtgctgggggtgaaggtcggcgcgggggcctacaacggatga
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