Nitrospirillum amazonense: Y958_30480
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Entry
Y958_30480 CDS
T04935
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nao
Nitrospirillum amazonense
Pathway
nao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Y958_30480 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nao03400
]
Y958_30480 (ligD)
Enzymes [BR:
nao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Y958_30480 (ligD)
DNA repair and recombination proteins [BR:
nao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Y958_30480 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASG25270
UniProt:
A0A248K349
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All DBs
Position
4:complement(653219..655777)
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AA seq
852 aa
AA seq
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MALETYHKKRDFAATPEPRGRKGRTAGHSFVIQKHDATRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGDFEGTIPKGEYGGGTVIVWDRGEWSPIGDAHKGYAKGH
LDFELHGEKLGGHWHLVRMHKRPGEKRENWLLIKGEDEAARGEGDPDILEERPESVKTGR
VINEVAGEEPGWSSKTGKIEKKARAPTRKAAPKSAQTPATPALKGAKAGPLPDFVEPALA
TLQAKPPVGERWVHEIKFDGYRLQARVEAGRVKLLTRGGLDWTKKFGKAVPEALAALPVG
KALIDGELVVENAAGASDFSALQADLSEGRSDRFLFYAFDLLYLEDRDLRGVGLERRKAA
LKDLLAEAGDPLRYSEHFDESGGLVLNHACRLSLEGIVSKVRDAAYRPGRGKGWIKSKCG
NRQEFVVAGYVPSTTARRAIGSLVMGVYDEGKLRHVGRVGTGYTVSVAEELFRRLERMRV
QDSPFEDTLTAEERRLVRYVRPELVAEVDFRTWTGDGNIRHAAFRGLREDKDPKDVVREP
AANAPAGTARAVGRAEPKPLLKLSHPDRLYWPDEGVTKAGLADYYTEIWRSIAPFIVGRP
LALLRCPNGIAGEKFFQKHAWKGLSKAIVQVPDPTEPAEGPLIAVNDLDGLLGLVQAAVL
EIHPWGSTLKDWERPDTITLDLDPGEGVAWQAVIDAAREIKDRLEQARLAAFVKTTGGKG
LHVVAPLKPKADWTAVKAFTKGIADAMAADSPDRFVATITKAKRTGKILVDYLRNQRGAT
AVAAYSTRARPGAAVSMPMAWEELSPAIGPAYFTVMTAPTRLAALSADPWADFRAAARPL
EAAKRPARKRAG
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggagacctaccacaagaagcgcgatttcgcggccacgcctgagccccggggg
cgcaagggccgcacggcgggtcacagcttcgtcatacagaagcatgacgccacccgcctg
cactatgattttcgcctggaaatggatggcgtgctgaaaagctgggccgtcacccgcggg
cccagcctggtacccggcgaaaagcgcctggccgtccatgtcgaggaccacccgctggac
tatggtgacttcgagggcaccatccccaagggcgaatatggcggcggcacggtcatcgtc
tgggaccggggcgaatggtcgcccatcggcgacgcccacaagggctatgccaagggccac
ctggatttcgagctgcacggggaaaagctgggcggccattggcacctggtgcgcatgcac
aagcggccgggggagaagcgcgagaactggctgctgatcaagggcgaggatgaggcggcg
cggggcgagggcgatcccgacatcctggaggagcggccggaatcggtgaagaccggccgc
gtcatcaatgaggtggcgggggaggaaccgggctggtcctccaaaacgggcaagatcgag
aagaaggcccgcgcgccgacccgtaaggccgcgcccaagagcgcgcaaacgccggcgacg
cccgccctgaagggtgccaaagccggcccgctgccggatttcgtggagccagccctggcc
acgctacaggccaagcccccggtgggtgagcgctgggtgcatgagatcaagttcgacggc
taccgcctgcaggcgcgcgtcgaggcggggcgggtgaagctgctgacccggggcggcctg
gactggaccaagaagttcggcaaggcagtgccggaggcgctggcggcgctgccggtgggc
aaggcactgatcgatggcgaactggtggtggaaaacgcggccggtgcctccgacttttcc
gccttgcaggccgacctcagcgagggccgcagcgaccgcttcctgttctacgccttcgac
cttctctatctggaggaccgggacctgcgcggcgtagggctggaacggcgcaaggcggcc
ctgaaggacctgctggcggaagccggcgatcccctgcggtacagcgagcattttgatgag
tccggcggcctggtgctgaaccacgcctgccgcctgagcctggagggcatcgtctccaag
gtgcgcgacgccgcctatcggccgggccggggcaagggctggatcaagtccaaatgcggc
aaccggcaggaattcgtggtggcgggctacgtcccctccaccaccgcacgccgcgccatc
ggctccctggtcatgggggtctatgacgagggcaagttgcgccacgtcggtcgcgtcggc
accggctataccgtttcggtggcggaagaattgttccgccggctggaacgcatgcgggtg
caagacagcccgttcgaggacaccctgacggcggaggaacggcgcctggtgcgctacgtc
cggccggagttggtggcggaggtggacttccgcacctggacgggcgacggtaacatccgg
catgccgctttccgcggcctgcgggaagacaaggacccgaaagacgtcgtgcgtgaacca
gccgccaatgcgccggcgggcaccgcccgcgcggtaggccgggcggagcccaagcccctg
ctgaagctgagccaccccgaccgcctctattggccggacgagggggtgaccaaggccggc
ttggccgactattacacggagatatggcggtccattgcccccttcatcgtcgggcggccg
ctggccctgctgcgttgccccaacggcatcgccggtgagaaattcttccagaagcatgcc
tggaaggggctgagcaaagccatcgtccaggtacccgacccgaccgagccggcggaaggg
ccgctgatcgcggtcaacgacctggatggcctgctgggcctggtgcaggcggcggtgctg
gaaatccacccctggggttcgaccctcaaggattgggaacggccggacaccataaccctc
gacctggacccgggggagggcgtggcatggcaggccgtcatcgacgctgcgcgcgagatc
aaggacaggctggagcaggcgaggctggcggccttcgtcaagaccacgggcggcaagggc
ctgcatgtggtggcgccgctgaagcccaaggccgactggacggctgtgaaggccttcacc
aagggcatcgccgacgccatggccgccgacagcccggaccgtttcgtggccaccatcacc
aaggccaagcgcaccggcaagatcctggtcgactatctgcgcaaccagcggggcgccacg
gcggtcgcggcctattccacccgcgcgcgacccggtgcggccgtctccatgcctatggcg
tgggaggaactgagcccggccatcggccccgcctatttcacggtcatgacggcacccacg
cggctggctgccctctccgccgacccctgggcggatttccgggcggcggcccggcccttg
gaggcggcaaaaaggccggcgcgaaagcgggccggttag
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