KEGG   Nitrospirillum amazonense: Y958_30480
Entry
Y958_30480        CDS       T04935                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nao  Nitrospirillum amazonense
Pathway
nao03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Y958_30480 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nao03400]
    Y958_30480 (ligD)
Enzymes [BR:nao01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Y958_30480 (ligD)
DNA repair and recombination proteins [BR:nao03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Y958_30480 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: ASG25270
UniProt: A0A248K349
LinkDB
Position
4:complement(653219..655777)
AA seq 852 aa
MALETYHKKRDFAATPEPRGRKGRTAGHSFVIQKHDATRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGDFEGTIPKGEYGGGTVIVWDRGEWSPIGDAHKGYAKGH
LDFELHGEKLGGHWHLVRMHKRPGEKRENWLLIKGEDEAARGEGDPDILEERPESVKTGR
VINEVAGEEPGWSSKTGKIEKKARAPTRKAAPKSAQTPATPALKGAKAGPLPDFVEPALA
TLQAKPPVGERWVHEIKFDGYRLQARVEAGRVKLLTRGGLDWTKKFGKAVPEALAALPVG
KALIDGELVVENAAGASDFSALQADLSEGRSDRFLFYAFDLLYLEDRDLRGVGLERRKAA
LKDLLAEAGDPLRYSEHFDESGGLVLNHACRLSLEGIVSKVRDAAYRPGRGKGWIKSKCG
NRQEFVVAGYVPSTTARRAIGSLVMGVYDEGKLRHVGRVGTGYTVSVAEELFRRLERMRV
QDSPFEDTLTAEERRLVRYVRPELVAEVDFRTWTGDGNIRHAAFRGLREDKDPKDVVREP
AANAPAGTARAVGRAEPKPLLKLSHPDRLYWPDEGVTKAGLADYYTEIWRSIAPFIVGRP
LALLRCPNGIAGEKFFQKHAWKGLSKAIVQVPDPTEPAEGPLIAVNDLDGLLGLVQAAVL
EIHPWGSTLKDWERPDTITLDLDPGEGVAWQAVIDAAREIKDRLEQARLAAFVKTTGGKG
LHVVAPLKPKADWTAVKAFTKGIADAMAADSPDRFVATITKAKRTGKILVDYLRNQRGAT
AVAAYSTRARPGAAVSMPMAWEELSPAIGPAYFTVMTAPTRLAALSADPWADFRAAARPL
EAAKRPARKRAG
NT seq 2559 nt   +upstreamnt  +downstreamnt
atggcgctggagacctaccacaagaagcgcgatttcgcggccacgcctgagccccggggg
cgcaagggccgcacggcgggtcacagcttcgtcatacagaagcatgacgccacccgcctg
cactatgattttcgcctggaaatggatggcgtgctgaaaagctgggccgtcacccgcggg
cccagcctggtacccggcgaaaagcgcctggccgtccatgtcgaggaccacccgctggac
tatggtgacttcgagggcaccatccccaagggcgaatatggcggcggcacggtcatcgtc
tgggaccggggcgaatggtcgcccatcggcgacgcccacaagggctatgccaagggccac
ctggatttcgagctgcacggggaaaagctgggcggccattggcacctggtgcgcatgcac
aagcggccgggggagaagcgcgagaactggctgctgatcaagggcgaggatgaggcggcg
cggggcgagggcgatcccgacatcctggaggagcggccggaatcggtgaagaccggccgc
gtcatcaatgaggtggcgggggaggaaccgggctggtcctccaaaacgggcaagatcgag
aagaaggcccgcgcgccgacccgtaaggccgcgcccaagagcgcgcaaacgccggcgacg
cccgccctgaagggtgccaaagccggcccgctgccggatttcgtggagccagccctggcc
acgctacaggccaagcccccggtgggtgagcgctgggtgcatgagatcaagttcgacggc
taccgcctgcaggcgcgcgtcgaggcggggcgggtgaagctgctgacccggggcggcctg
gactggaccaagaagttcggcaaggcagtgccggaggcgctggcggcgctgccggtgggc
aaggcactgatcgatggcgaactggtggtggaaaacgcggccggtgcctccgacttttcc
gccttgcaggccgacctcagcgagggccgcagcgaccgcttcctgttctacgccttcgac
cttctctatctggaggaccgggacctgcgcggcgtagggctggaacggcgcaaggcggcc
ctgaaggacctgctggcggaagccggcgatcccctgcggtacagcgagcattttgatgag
tccggcggcctggtgctgaaccacgcctgccgcctgagcctggagggcatcgtctccaag
gtgcgcgacgccgcctatcggccgggccggggcaagggctggatcaagtccaaatgcggc
aaccggcaggaattcgtggtggcgggctacgtcccctccaccaccgcacgccgcgccatc
ggctccctggtcatgggggtctatgacgagggcaagttgcgccacgtcggtcgcgtcggc
accggctataccgtttcggtggcggaagaattgttccgccggctggaacgcatgcgggtg
caagacagcccgttcgaggacaccctgacggcggaggaacggcgcctggtgcgctacgtc
cggccggagttggtggcggaggtggacttccgcacctggacgggcgacggtaacatccgg
catgccgctttccgcggcctgcgggaagacaaggacccgaaagacgtcgtgcgtgaacca
gccgccaatgcgccggcgggcaccgcccgcgcggtaggccgggcggagcccaagcccctg
ctgaagctgagccaccccgaccgcctctattggccggacgagggggtgaccaaggccggc
ttggccgactattacacggagatatggcggtccattgcccccttcatcgtcgggcggccg
ctggccctgctgcgttgccccaacggcatcgccggtgagaaattcttccagaagcatgcc
tggaaggggctgagcaaagccatcgtccaggtacccgacccgaccgagccggcggaaggg
ccgctgatcgcggtcaacgacctggatggcctgctgggcctggtgcaggcggcggtgctg
gaaatccacccctggggttcgaccctcaaggattgggaacggccggacaccataaccctc
gacctggacccgggggagggcgtggcatggcaggccgtcatcgacgctgcgcgcgagatc
aaggacaggctggagcaggcgaggctggcggccttcgtcaagaccacgggcggcaagggc
ctgcatgtggtggcgccgctgaagcccaaggccgactggacggctgtgaaggccttcacc
aagggcatcgccgacgccatggccgccgacagcccggaccgtttcgtggccaccatcacc
aaggccaagcgcaccggcaagatcctggtcgactatctgcgcaaccagcggggcgccacg
gcggtcgcggcctattccacccgcgcgcgacccggtgcggccgtctccatgcctatggcg
tgggaggaactgagcccggccatcggccccgcctatttcacggtcatgacggcacccacg
cggctggctgccctctccgccgacccctgggcggatttccgggcggcggcccggcccttg
gaggcggcaaaaaggccggcgcgaaagcgggccggttag

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