Nautilia sp. PV-1: C3L23_07770
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Entry
C3L23_07770 CDS
T05986
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nap
Nautilia sp. PV-1
Pathway
nap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3L23_07770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nap03400
]
C3L23_07770
Enzymes [BR:
nap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3L23_07770
DNA repair and recombination proteins [BR:
nap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C3L23_07770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_30
Helicase_RecD
TsaE
HECT
Motif
Other DBs
NCBI-ProteinID:
AZV47174
UniProt:
A0A3T0L3G2
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All DBs
Position
1463490..1466423
Genome browser
AA seq
977 aa
AA seq
DB search
MQAKIYEHLLNQKTDIVTSSQKEALLGGEVYKYLNIPYVVFPDFRAVLGDDLRSFRTEIF
ELNNALYKFYNENSYFISPYTTVLKKLPVKKYYKDIVLEFGDDINLNELKEKLVLWGYEH
VDIVSEKGEVSFRGDIFDIWPINLDKPVRVSLFDTEIESIRIFEETDQKSIEEIESFKII
PAIAALDKNEYNEILDKINKSEFSAFYKDFYSLGFWYLQRDFLDGFSILYDISQEIQEYK
EFHKEFNTYIEKAPLIPNGKCKDITVKNIKEYLSLHKNQKIEILAKNEVLLKEADIYEDI
KLKAPLVKWIKSSAHVNISCPEKTVISLNPPEFEKRKKTSLVLDELKKGDFVVHESHGIG
KFNGLKKVEILGKVSEYAEILYANDDKLLLPVENLNLIEKYIAPGGVIPALDKLGKGTFA
KKREKIKEKIFAMAADIIKLQAQRELIKPAPLNFEGVKEFIDKAPFIHTPDQKETINAIL
EDFKTKVMDRLLSGDVGFGKTEVAMVASFVVAKSGYQVAVIAPTTILVNQHFESFKERFK
DYPDIKIAKLDRFTSSKEKKEITEGVKNGEIKILISTHAGLNLKYKNLGLVIIDEEHKFG
VKQKEKLKELAKDVHTLYMSATPIPRTLNMALSQVKSISTLETAPKGKKSTKTFVKEWNE
NLIKEVILRELRRGGQIFYIYNNIAYIEQKKKELQNILPDLRILVLHAKLTPSQIEKGLV
DFIAGKYDLALTTTIVESGIHIPNVNTVIVENADKFGIADLHQIRGRVGRGKHEGYAYFL
VKNKDELSEDAKKRLLALEENSFLGSGQVLAMRDLEIRGGGNILGAQQSGQIKGVGYSMY
VKMLEDTLKELSGNKIQENETEVKLNINAYISDEVVKEDRLRLDLYKRFSNAKTIKEIYE
LEKEMIDRFSKLDKPTRNFIEKMKVKVLAQDKGIKSISNYGENITIIYSDDKKEFIKAPA
KDDDIILETIITKLKDI
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggcaaaaatatatgaacatcttctaaatcaaaagacggatatagtaacctcttct
caaaaagaggctctgcttggtggagaagtttataaatatttaaatatcccctacgttgtc
tttccggatttcagagcggttttaggagatgatttaagaagtttcagaacggaaattttt
gagcttaacaacgctttatataaattttataatgaaaactcatattttatttcgccatat
accaccgtattaaaaaagctgccggtaaaaaaatattataaagacattgtcttggaattc
ggtgacgacattaatctaaatgaactgaaagaaaaactggttctttggggatacgaacat
gtggatatagtaagtgaaaaaggagaagtaagcttcaggggagacatatttgacatatgg
ccgataaacctggataaacccgtaagggtttccctttttgatactgaaatagagagtata
agaattttcgaagaaacggaccagaaaagcattgaagaaattgaaagtttcaaaataata
ccggccatagcggcactggacaaaaatgaatacaatgaaatactggataaaatcaacaaa
agcgaattttccgcattttacaaggatttttattcattaggcttttggtacctgcaaagg
gattttcttgacggtttttcgatactttacgatataagccaggaaattcaggaatataaa
gagtttcataaagaatttaatacatatattgaaaaagctcctttaatccctaacgggaaa
tgtaaagatattactgtaaaaaacattaaagaatatctctcattacacaaaaaccaaaaa
atagaaatactggctaaaaacgaagtgttattaaaagaagctgatatttatgaagacata
aaactgaaagcccctttggtcaaatggataaaaagttccgctcacgtaaatatttcatgc
cccgaaaaaacagtaatttcattaaatccgcctgaatttgaaaaaagaaaaaaaacctcc
ctggttcttgacgaactgaaaaaaggtgatttcgttgttcatgaatcacacggcatcgga
aaatttaacggactgaaaaaagttgaaatattaggaaaagtaagcgaatatgcggaaata
ttatacgcaaacgacgacaaactgcttttacctgtagaaaatctaaatttaatagaaaaa
tatattgcccccggaggtgtaattccggctctcgataaactcggaaaaggcacattcgct
aaaaaaagagaaaaaattaaagaaaaaattttcgcaatggctgccgatattatcaaactc
caggcacaaagggaacttataaaaccggctcctttaaattttgaaggcgtaaaagaattt
atcgataaagcgccttttattcatacaccggaccaaaaagagacaataaacgctatttta
gaagattttaaaacaaaagtaatggacagactgttaagcggagacgtcggattcggaaaa
acggaagtggcgatggttgcaagttttgtagtggcaaaatccggctatcaggtggccgtt
atagcacctactacaattttggtcaaccagcatttcgaaagttttaaagaaagatttaaa
gattatcccgacataaaaatagccaaactggacaggtttacatcttctaaagaaaaaaaa
gaaataaccgaaggcgtaaaaaacggagaaataaaaattttaatctcaactcatgcgggt
ttaaatcttaaatataaaaatttaggtctggttataatagacgaagaacataaattcggc
gtaaaacagaaagaaaaattaaaagaactggcaaaagacgttcatacactttacatgtct
gccactccgataccgagaaccctgaacatggcgctttctcaggttaaatctatttccacc
ctggaaacggctccaaaagggaaaaaatctacaaaaacatttgtaaaagaatggaatgaa
aatctcattaaagaagttattttaagagaactaaggcgcggaggacagatattttatatt
tacaacaacatagcttacatagaacaaaagaaaaaagagcttcaaaatattcttccggat
cttagaatacttgttttacatgccaaactcactccttcacaaatcgaaaaaggccttgtg
gattttatagcgggcaaatacgacctggcgcttacaaccaccatagtcgaaagcggaata
catatacctaatgtaaacaccgtaatagtggaaaacgccgacaaattcggaatagctgat
cttcatcagataagaggcagagtgggaagaggaaaacacgaaggttatgcatacttttta
gttaaaaataaagacgaattaagtgaagacgcaaaaaaaaggcttttggcgcttgaagaa
aattcattcctcggaagcggacaggtgcttgccatgagagatctggaaatcagaggcggc
ggcaacatattgggtgcacagcagtcaggacagataaaaggcgtaggttattccatgtat
gtaaaaatgcttgaagacactttaaaagagctaagcggcaataaaattcaggaaaacgaa
acagaagtaaaacttaacattaacgcatacatatcagacgaagtagttaaagaagacaga
ttaagacttgatttatacaaacgtttttcaaatgcaaaaacaattaaagaaatatacgaa
ctcgaaaaagaaatgatagacaggttttcaaaactggacaagccgacacgcaattttatt
gaaaaaatgaaagtcaaagtgctggctcaggacaaaggaataaaatctatatccaattac
ggtgaaaacataactattatctattctgacgacaaaaaagaatttataaaagcgcctgca
aaagacgacgatataattttagaaactattattacgaaacttaaagatatttga
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