Nocardioides aquaticus: ENKNEFLB_03253
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Entry
ENKNEFLB_03253 CDS
T07580
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
naqu
Nocardioides aquaticus
Pathway
naqu03420
Nucleotide excision repair
naqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ENKNEFLB_03253 (pcrA)
03430 Mismatch repair
ENKNEFLB_03253 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naqu03400
]
ENKNEFLB_03253 (pcrA)
Enzymes [BR:
naqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ENKNEFLB_03253 (pcrA)
DNA repair and recombination proteins [BR:
naqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ENKNEFLB_03253 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
ENKNEFLB_03253 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QVT80852
LinkDB
All DBs
Position
complement(3343079..3346366)
Genome browser
AA seq
1095 aa
AA seq
DB search
MTPRRIDTPEELQRAMRTEHPPSPQQWAAITAPLAPAVVIAGAGSGKTTLMAARVVYLVL
TGQVRPEQVLGLTFTTKAAAELRTRIRDALVAAGALPAPGAVTAAPPPGADGPDGPDGPD
GADDPVEPTVLTYNAYAAQLLTEHGLLIGHEPDTRVVTDAARFQLGGRVVDRFPGDVQHL
TDHPPTAIQNLLALDGSMSEHLRDADDVRRVDAEARAAFVRARDAEVAGKDRKGHREAVE
KAIHAIDRRDELLGLVKAYRRLKADLGLMDFSDQIELGARLADERPEVGERERGRFAVVL
LDEYQDTSVAQALMLSRLFSGPDPARGRGHAVTAVGDPNQAIYGWRGASVSNILGFARSF
PPATGTAQRFPLSVNRRSDTLVLDVANRVAAPLMDLYDEVEQLLPSPTAAPGEVGLHVHE
THADELAWLARAVRAEHDDGRAWSDVGVLVRDNSHAAEVFDALSGADVPVEIVGLSGLLR
LPEVAEVVATLHLMQDVTANAALLTLLTGPRWAVGPRDLRLLQQRAAELAGGRGRPTEAA
AGIGEQLLAIADGVDPAEVAALDDALHDPGPGGYSPAARERFALLVDELRSLRGHVGEPL
LDLVRRIMDASGVDVELASAVGPAAATRRENLDLFVKAVADFRGVDGEVTLPALLAYLTA
EEDGAGLDLATPTEADSVKLLTVHRSKGLEWPTVFLVGVGETRFPSNRSRTLWTSSPAVL
PAPLRGDADDLPQLAGHDKEALEAYRQATRDHDAQEELRLAYVALTRAEHREHVSSYCWG
SRSTPFGPSAYQRTVRELLAERGLEVASWREKPAKGEPNPYADVDTSVPWPHAGRGAETA
LRLEAAARVQAVREASHRSAAPPPGAEPDVIEAARIAEWDDEIERLLTEARSARAGSREV
TLPSSLSATSLGRLREDPEAFARDLARPMPRPPAPEARFGTRFHAWVEARFGQQLLLDPD
DLPGRADGDIEDDADLAALAASFERSEFAERAPHAVEPSFALVLAGQVVRGRIDAVYAEE
VDGRPGFLLVDWKTSRAPNADPLQLAVYRLAWAELHGMEPAQVRAAFFYVRTGRLVEPPD
LPGRPELEALLSPSG
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
gtgaccccccgccggatcgacacgcccgaggagctccagcgcgcgatgcgcaccgagcac
ccgccgagcccccagcagtgggcggccatcaccgctccgctggccccggccgtggtcatc
gccggggccgggtcgggcaagacgacgctgatggcggcccgggtggtctacctcgtgctg
accgggcaggtccgccccgagcaggtgctcggcctgaccttcaccaccaaggccgccgcc
gagctgcgcacccgcatccgggacgcgctcgtggcggccggggcgctgccggcgccgggc
gccgtcacggccgcgccgccgcccggcgcggacggtccggacggtccggacggtccggac
ggggccgacgacccggtcgagccgaccgtgctgacctacaacgcctacgccgcgcagctg
ctcaccgagcacggcctgctgatcggccacgagcccgacacccgggtcgtcaccgacgcg
gcgcgcttccagctcggcgggcgggtcgtcgaccggttccccggcgacgtgcagcacctc
acggaccacccgcccaccgccatccagaacctgctggccctggacgggtcgatgagcgag
cacctccgcgacgccgacgacgtgcgccgcgtcgacgccgaggcgcgcgcggcgttcgtg
cgtgcccgcgacgccgaggtggccggcaaggaccgcaagggccaccgcgaggcggtggag
aaggcgatccacgcgatcgaccgccgcgacgagctgctgggtctggtgaaggcgtaccgc
cggctgaaggccgacctcgggctgatggacttctccgaccagatcgagctcggcgcccgg
ctcgccgacgagcggcccgaggtcggcgagcgcgagcgcggccggttcgcggtggtgctc
ctcgacgagtaccaggacacctcggtcgcccaggcgctgatgctgtcccgcctcttctcc
ggacccgacccggcccgggggcggggtcacgcggtgaccgccgtcggcgaccccaaccag
gccatctacggctggcggggcgcgtcggtgtcgaacatcctggggttcgcccgctccttc
ccgccggcgaccgggacggcgcagcgcttcccgctgtcggtgaaccggcgctccgacacc
ctggtgctcgacgtggccaaccgcgtcgcggcgcccctgatggacctctacgacgaggtc
gagcagctcctcccgagcccgacggcggccccgggggaggtgggcctgcacgtccacgag
acccacgccgacgagctcgcctggctggcccgcgcggtccgtgccgagcacgacgacgga
cgggcctggtccgacgtcggggtgctggtgcgcgacaactcccacgccgcggaggtgttc
gacgcgctctccggcgccgacgtgccggtggagatcgtggggctgtcgggcctgctgcgc
ctgcccgaggtcgccgaggtcgtggccaccctccacctgatgcaggacgtcaccgccaac
gccgcgttgctgaccctgctgaccggcccccgctgggccgtgggcccgcgcgacctgcgc
ctgctgcagcagcgggccgccgagctcgccggcggccgcggtcgcccgacagaggccgcg
gccgggatcggcgagcagctgctggcgatcgccgacggggtggacccggccgaggtggcc
gcgctcgacgacgcgctgcacgacccgggccccggcggctactcacccgccgcgcgggag
cggttcgcgctgctcgtcgacgagctgcgctcgctgcgggggcacgtgggcgagccgctg
ctcgacctggtgcggcggatcatggacgcctccggcgtcgacgtcgagctggcctcggcg
gtcgggccggcggcagcgacccgccgggagaacctcgacctcttcgtgaaggccgtcgcc
gacttccgcggcgtcgacggcgaggtgaccctcccggcgctgctggcctacctcaccgcc
gaggaggacggcgccggcctggacctggcgaccccgaccgaggccgactcggtcaagctg
ctcaccgtccaccgttccaagggactggagtggccgaccgtgttcctggtcggggtgggg
gagacccgcttcccctcgaaccgctcccgcacgctgtggacctcctcgccggcggtcctg
cccgcgccgctgcgcggcgacgccgacgacctgccccagctggccgggcacgacaaggag
gcgctcgaggcgtaccggcaggccacccgcgaccacgacgcccaagaagagctgcggctg
gcctacgtcgcgctcacccgcgccgagcaccgcgagcacgtctcgtcctactgctggggg
tcgcgctccaccccgttcggtccgtcggcctaccagcgcaccgtgcgcgagctgctcgcc
gagcgtggcctggaggtcgcgtcctggcgcgagaaacccgcgaagggggagccgaacccg
tacgccgacgtggacaccagcgtcccgtggccgcacgccggacgcggcgccgagacggcg
ctccgcctcgaggcggccgcgcgggtgcaggcggtgcgggaggcgagccaccgctccgcc
gcgcccccgccgggcgcggagcccgacgtgatcgaggccgcccggatcgcggagtgggac
gacgagatcgagcggctgctgaccgaggcgcgctccgcgcgcgccggctcccgggaggtg
accctgccgtcgtcgctgtcggcgacctcgctcgggcggctgcgggaggaccccgaggcg
ttcgcccgcgacctcgcccgaccgatgccccgcccaccggcccccgaggcccggttcggc
acccggttccacgcctgggtcgaggcgcgcttcggccagcagctcctgctcgaccccgac
gacctccccggtcgggccgacggcgacatcgaggacgacgcggacctggccgcgctcgcg
gcctccttcgagcgcagcgagttcgccgagcgggccccgcacgccgtcgagccgtccttc
gcgctggtgctggccggacaggtcgtgcgcggacggatcgacgccgtctacgccgaggag
gtcgacggccggcccgggttcctgctggtcgactggaagaccagccgcgcgccgaacgcg
gacccgctgcagctcgcggtctaccgcctggcctgggccgagctgcacgggatggagccc
gcgcaggtgcgtgccgcgttcttctacgtccgcaccggtcggctggtggagcccccggac
ctgcccggacggccggagctggaggccctgctcagcccgtccggctga
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