Nocardioides aquaticus: ENKNEFLB_03629
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Entry
ENKNEFLB_03629 CDS
T07580
Symbol
ligD_3
Name
(GenBank) Multifunctional non-homologous end joining DNA repair protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
naqu
Nocardioides aquaticus
Pathway
naqu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ENKNEFLB_03629 (ligD_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naqu03400
]
ENKNEFLB_03629 (ligD_3)
Enzymes [BR:
naqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ENKNEFLB_03629 (ligD_3)
DNA repair and recombination proteins [BR:
naqu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ENKNEFLB_03629 (ligD_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DUF72
Motif
Other DBs
NCBI-ProteinID:
QVT81221
LinkDB
All DBs
Position
complement(3707376..3708350)
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AA seq
324 aa
AA seq
DB search
MRPMLATPTTEVPSGERWSHEVKWDGVRVLARGGADLGDAVRMTSRNDNEVTVAWPDLST
SPLPGRDLLVDGEVIALNERGLPDFRTLQERMHVRRAATAAALADRVPATYMVFDLLALD
GEDLTGLAWAERRARLEDLAGPDGLGATGWQVPAAYDDGAMLLEATRTQGLEGVVSKRRD
SRYAFERRSPHWLKLAHRHRRSYVVGGWRPQEGSGADGPLAAVLVGEPTSDGLAYRGRVG
SGIGGRRSAELAAMVAPLARAASPFHDEVPRVDARGTHWVEPVLVVDVDTHGAGYARLRQ
PSFRGVRPDLDPDDLATDDLTGQS
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccatgctcgccaccccgaccaccgaggtgccgtccggggagcggtggtcgcac
gaggtgaagtgggacggcgtccgggtcctggcacgcggcggggccgacctgggcgacgcc
gtgcggatgaccagccgcaacgacaacgaggtcaccgtggcgtggcccgacctctcgacc
agccccctgccggggcgcgacctgctggtcgacggcgaggtgatcgcgctgaacgagcgc
gggctgccggacttccgcaccctgcaggagcggatgcacgtgcgccgggcggccacggcg
gccgcgctggccgaccgggtgccggccacctacatggtcttcgacctgctcgcgctcgac
ggcgaggacctcacggggctggcctgggccgagcgacgggcgcgcctggaggacctcgcc
ggccccgacgggctcggggccaccgggtggcaggtgcccgcggcgtacgacgacggggcg
atgctgctcgaggccacccgcacccagggactggagggcgtggtcagcaagcgccgcgac
tcccgctacgccttcgagcggcgcagcccgcactggctgaagctggcgcaccggcaccgg
cgctcgtacgtcgtggggggctggcgcccgcaggagggcagcggcgccgacggtccgctg
gccgccgtgctggtcggcgagccgacgtccgacgggctggcctaccggggccgcgtgggc
agcgggatcgggggccggcggagcgcggagctggctgcgatggtggccccgctggcgcgg
gcggccagcccgttccacgacgaggtgccccgcgtcgacgcccgcggcacgcactgggtc
gagccggtgctggtcgtcgacgtcgacacgcacggggccgggtacgcccggctgcgccag
ccgtccttccgcggggtccggcccgacctcgaccccgacgacctggccaccgacgacctg
accgggcagtcgtga
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