Nocardioides aquaticus: ENKNEFLB_03792
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Entry
ENKNEFLB_03792 CDS
T07580
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
naqu
Nocardioides aquaticus
Pathway
naqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
naqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ENKNEFLB_03792 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naqu03400
]
ENKNEFLB_03792 (mfd)
Enzymes [BR:
naqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ENKNEFLB_03792 (mfd)
DNA repair and recombination proteins [BR:
naqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ENKNEFLB_03792 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
QVT81383
LinkDB
All DBs
Position
complement(3864471..3868034)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSLSGLTEAVLADPVLAAALEDARTAGVRTRELTGPEALRPFVVAGLVREGRSVLAVTAT
SREAEDLEAALGSLIDPELVVSYPSWETLPHERLSPRSDTVGRRLAVLRRLRHPGTTAGT
GPVKVVVAPVRSVLQPQVKGLGDLEPVELAKGDEAPLEDLVQRLSDAAYARVDLVEKRGE
FAVRGGILDVFPPTEEHPLRVELWGDEVEEIRTFSVADQRTLEPAARLWAPPCRELLLTD
EVRARAAELGRAHPQLLELTDKIAGGVAVEGMESLAPVLVDEMELLVDLMPDDTHVLVLD
PERARSRAHDLVATSEEFLGASWAAAASGGSAPIDLGAASYHSLADVREESLARGLPWWT
MSPFGLDDAAAPAGDVESVAVRALPAVPVDTYRGDVDRAASDLEKWRADAYRVVVVHQGH
GPAQRMVEALGERDVPAVLVEPDDTTEHPGVIEVTCGALSRGFVDDTNRLALVTGEDISG
QKASTRDMRAMPARRRKQIDPLELAAGDYVVHEQHGVGRFVEMKQREIQGAVREYLVLEY
GAAKRGAAPDRLFVPADALDQVTRYVGGEQPSLDRLGGADWAKRKGRARKAVREIAAELI
KLYAARQATKGFAFGPDTPWQRELEDAFPFNETVDQLTTVEEVKSDMRQTVPMDRLVCGD
VGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLVTQHMSTFSERMTGFPVVIKGMSRFQTD
AEVREVMVGLADGSVDIVVGTHRLLNPDVRVKDLGLIIVDEEQRFGVEHKEQMKRLRTSV
DVLAMSATPIPRTLEMAITGIREMSTITTPPEERHPVLTYVGGYEDRQVTAAVRRELLRD
GQVFYIHNRVNSIDKAAARIRELVPEARVAVAHGQMGEHQLEQVMVDFWEKSFDVLVCTT
IVESGLDVSNANTMIIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPSEKPLTETAHER
LATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGQQSGHIADVGFDLYVRLVGEAVADFRGD
APDDTLDEVRIELPVEAHLPHDYIPSERLRLEMYKRLAEVRVDADVDAIGEELQDRYGEP
PVPVVSLMLVARFRARARRAGIGEVTLAGRNVRFAPVSLPDSRKVRLERLYPKSLVKTSV
DTVLVPRPGIPGQTGTPVAGIALLEWARGVIDSVLDPDGAGAGGGTT
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctctccggactcaccgaggccgtcctggccgatcccgtcctggccgccgccctc
gaggacgcccggaccgccggggtccgcacccgcgagctgaccggccccgaggcgctgcgg
ccgttcgtcgtcgccggcctggtccgcgaggggcgcagcgtgctcgcggtgaccgcgacc
tcgcgcgaggccgaggacctcgaggccgcgctgggcagcctgatcgacccggagctggtg
gtctcctaccccagctgggagacgctgccgcacgagcggctgagcccccgcagcgacacc
gtcgggcggcgcctcgcggtgctgcgccggctccgccaccccggcaccacggccggcacc
ggtccggtcaaggtggtcgtcgcgccggtgcgctcggtcctccagccccaggtcaagggg
ctcggggacctcgagccggtcgagctggccaagggcgacgaggctccgctcgaggacctg
gtccagcggctgtcggacgcggcgtacgcccgggtcgacctggtcgagaagcggggcgag
ttcgcggtgcggggcgggatcctcgacgtcttcccgcccaccgaggagcacccgctgcgc
gtggagctctggggcgacgaggtggaggagatccggacgttctcggtcgccgaccagcgc
acgctcgagccggccgcccggctgtgggcgccgccgtgccgcgagctgctgctcaccgac
gaggtgcgcgcccgcgccgccgagctcggtcgcgcgcacccgcagctgctcgagctgacc
gacaagatcgccggcggcgtcgccgtcgagggcatggagtcgctggccccggtgctcgtc
gacgagatggagctgctcgtcgacctgatgcccgacgacacccacgtgctcgtgctggac
cccgagcgggcgcgcagccgggcgcacgacctggtggccaccagcgaggagttcctcggg
gccagctgggccgcggcggcctcgggcggctcggcgccgatcgacctcggtgcggcgtcg
taccactccctggccgacgtgcgcgaggagtcgctggcccggggcctgccctggtggacg
atgagcccgttcgggctcgacgacgccgcggcgccggccggtgacgtcgagtcggtcgcg
gtccgcgcgctgccggcggtgccggtcgacacctaccgcggcgacgtcgaccgcgccgcc
tccgacctggagaagtggcgcgcggacgcgtaccgcgtcgtggtcgtgcaccagggccac
ggcccggcgcagcggatggtcgaggcgctcggggagcgcgacgtcccggcggtcctggtc
gagcccgacgacaccaccgagcaccccggcgtgatcgaggtgacctgcggcgcgctgtcg
cgcggcttcgtcgacgacaccaaccggttggcgctggtcaccggcgaggacatctcgggg
cagaaggcctcgacccgggacatgcgcgcgatgccggcccggcgccgcaagcagatcgac
ccgctcgagctcgcggccggcgactacgtcgtgcacgagcagcacggcgtggggcgcttc
gtggagatgaagcagcgcgagatccagggcgcggtgcgcgagtacctcgtcctggagtac
ggcgcggccaagcgcggcgcggcgcccgaccggctcttcgtgccggccgacgccctcgac
caggtcacccgctacgtcggcggcgagcagcccagcctggaccggctcggcggcgccgac
tgggccaagcgcaaggggcgcgcccgcaaggccgtgcgcgagatcgccgccgagctgatc
aagctctacgccgcccggcaggccaccaagggcttcgccttcgggccggacaccccctgg
cagcgcgagctcgaggacgccttcccgttcaacgagaccgtcgaccagctgaccaccgtc
gaggaggtcaagtccgacatgcggcagacggtgccgatggaccgcctggtctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgcgcggccttcaaggccgtccaggacggc
aagcaggtcgtcgtgctggtgcccaccacgctgctggtgacccagcacatgtcgaccttc
tcggagcggatgaccggcttcccggtcgtcatcaagggcatgtcgcgcttccagaccgac
gccgaggtgcgtgaggtgatggtcggcctggccgacggcagcgtcgacatcgtggtcggc
acccaccggctgctcaaccccgacgtccgggtcaaggacctcggcctgatcatcgtcgac
gaggagcagcgcttcggcgtcgagcacaaggagcagatgaagcgcctgcgcacctccgtc
gacgtgctggcgatgagcgcgacgccgatcccgcggaccctggagatggcgatcaccggc
atccgcgagatgtcgacgatcaccaccccgcccgaggagcggcacccggtgctgacctac
gtcggcggctacgaggaccgtcaggtcaccgcggccgtgcgccgcgagctgctgcgcgac
ggccaggtgttctacatccacaaccgggtcaactccatcgacaaggccgcggcccggatc
cgcgagctggtgcccgaggcccgggtcgccgtggcgcacggccagatgggcgagcaccag
ctcgagcaggtgatggtcgacttctgggagaagagcttcgacgtgctcgtgtgcaccacg
atcgtcgagtccggcctggacgtctcgaacgccaacaccatgatcatcgagcgggccgac
accctcggcctgtcccagctccaccagctccgggggcgcgtgggccgatcgcgcgagcgg
gcctacgcctacttcctctacccgagcgagaagccgctgaccgagaccgcgcacgagcgg
ctggccaccctggcccagcactccgacctcggcggcggcatggcgatcgcgatgaaggac
ctcgagatccgcggcgcgggcaacctgctcggcgggcagcagtccggccacatcgccgac
gtcggcttcgacctgtacgtccgcctggtgggggaggccgtcgcggacttccgcggcgac
gcgcccgacgacaccctcgacgaggtccgcatcgagctgccggtcgaggcgcacctgccg
cacgactacatccccagcgagcggctgcggctggagatgtacaagcggctcgccgaggtg
cgcgtcgacgccgacgtggacgcgatcggcgaggagctccaggaccggtacggcgagccg
ccggtgccggtggtcagcctgatgctggtggcgcggttccgggcccgggcgcgtcgcgcc
gggatcggcgaggtgaccctggcggggcgcaacgtccgcttcgcgccggtgagcctgccc
gactcgcgcaaggtccgcctcgagcggctctaccccaagtcgctggtcaagacctcggtc
gacaccgtcctggtcccgcggccgggcatccccggtcagaccgggacaccggtggccggc
atcgccctgcttgaatgggcgcgcggcgtcatcgacagcgtgctggaccccgacggggcc
ggtgccggaggaggaaccacgtga
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