Natrialbaceae archaeon AArc-T1-2: QQ977_01325
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Entry
QQ977_01325 CDS
T09282
Symbol
ligA
Name
(GenBank) ATP-dependent DNA ligase LigA
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nara
Natrialbaceae archaeon AArc-T1-2
Pathway
nara03030
DNA replication
nara03410
Base excision repair
nara03420
Nucleotide excision repair
nara03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QQ977_01325 (ligA)
03410 Base excision repair
QQ977_01325 (ligA)
03420 Nucleotide excision repair
QQ977_01325 (ligA)
03430 Mismatch repair
QQ977_01325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nara03032
]
QQ977_01325 (ligA)
03400 DNA repair and recombination proteins [BR:
nara03400
]
QQ977_01325 (ligA)
Enzymes [BR:
nara01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QQ977_01325 (ligA)
6.5.1.6 DNA ligase (ATP or NAD+)
QQ977_01325 (ligA)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
QQ977_01325 (ligA)
DNA replication proteins [BR:
nara03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
QQ977_01325 (ligA)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
QQ977_01325 (ligA)
DNA repair and recombination proteins [BR:
nara03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
QQ977_01325 (ligA)
NER (nucleotide excision repair)
Other NER factors
QQ977_01325 (ligA)
MMR (mismatch excision repair)
Other MMR factors
QQ977_01325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
UPF0231
DUF5486
Motif
Other DBs
NCBI-ProteinID:
WIV67398
UniProt:
A0A9Y1Z8I2
LinkDB
All DBs
Position
complement(274732..276435)
Genome browser
AA seq
567 aa
AA seq
DB search
MEFAAFADQVDEIEAESSDHGTVDGVSRLLEHAARTDPWDETPGESEERTGDLEVVARYV
QGRVFPAWDARKLEVGPSACHEAIARAAGRNVDADDVEARLAAVGEIGTVAASYEFGGQQ
GLGAFTDGDGTDGLTIREVHETLVDLAAAEGSGSQDRKVDLLFGLFNRCTSTEARYLARL
VLAEMRIGVGEGTVRDAVAAAFDVPDDRVERALQVANDYGRVARVAIEDGLEGLEAMTLS
VGRPVKAMLAQAGTVTEAVESWEEAAVEWKYDGARVQLHHADDEVRVFSRNMEDVTDALP
EVVEFADDRLDAPAILDGEVVAIDEAGDPLPFQEVLRRFRRKHDVAKAREDVTVEPVFFD
CLHVDGEDLLETPLRDRHARLESLLAGGEGRSKLWLTDDPDEIDAIDAEALESGHEGIML
KDPDSTYSPGRRGKRWLKRKPDVETLDCVVTGAEWGEGRRATFLGTFELSIRDGEAYETI
GKVATGITDEKLAELTALLEPHVRSQDGTSVDVEPAVVFEVGYEEIQSSPTYSSGYALRF
PRFVGVREDLDPDDADTVERVRSLRET
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgccgccttcgccgaccaggtcgacgagatcgaagccgagtcctcagaccac
gggaccgtcgacggcgtcagccgactgctcgagcacgccgccaggacggacccctgggac
gagacgccgggagagagcgaagagcgaaccggcgatctcgaggtcgtcgcccgatacgtc
caggggcgggtgttcccggcctgggacgcccgcaagctcgaggtcggacccagcgcctgt
cacgaggcgatcgcgcgggcggccggacgaaacgtcgacgccgacgacgtcgaggcgcga
ctcgcggcggtcggcgagatcggcacggtcgcggcgagttacgagttcggcggccagcag
ggactgggggcgttcaccgacggcgacggcacagacggcctgacgatccgggaggtccac
gagacgctcgtcgacctcgcggccgccgagggatcgggcagccaggaccggaaggtcgac
ctgctctttggcctgttcaaccgctgtacgagcaccgaggcgcgctatctcgcccggctc
gtcctcgccgagatgcgcatcggcgtcggcgaggggacggtcagagacgccgtcgccgcc
gccttcgacgttcccgatgatcgggtcgaacgcgccctgcaggtggcaaacgactacggc
cgggtcgcccgcgtcgcgatcgaggacggactcgagggactcgaggcgatgacgctttcg
gtcggccggccggtgaaggcgatgctcgctcaggccggaacggtgaccgaggccgtagag
tcctgggaggaggcggccgtcgagtggaagtacgacggcgcacgcgtccagttacaccac
gcagacgacgaggtgcgggtcttctcacggaacatggaggacgtaaccgacgccctcccc
gaggtcgtcgagttcgcggacgaccgtctcgacgcccccgcgattctggacggcgaggtc
gtcgcgatcgacgaggcgggcgatccgctcccgttccaggaggtgttacgccgcttccgg
cgcaaacacgacgtcgcgaaggctcgcgaggacgtgaccgtcgaaccggtctttttcgac
tgtctccacgtcgacggcgaggacctgctcgagacgccgctgcgtgaccgtcacgcccgt
ctcgagtcgctgctcgcaggcggcgagggccgctcgaagctgtggctgactgacgacccc
gacgagatcgacgcaatcgacgccgaggcgctcgagtctggtcacgaggggatcatgctc
aaagatcccgactcgacgtactcgccgggtcgacgcggaaagcgatggctcaagcgaaaa
ccggacgtcgagaccctcgattgcgtggtgaccggtgccgagtggggcgagggtcggcgg
gcgacgtttctcggaacgttcgagctctcgatccgtgacggcgaggcatacgagacgatc
ggcaaggtcgcgaccggcatcaccgacgagaaactggccgagctgacggcgttgctcgaa
ccccacgtcagaagtcaggacgggacgagcgtcgacgtcgagccggcggtcgtcttcgag
gtcggctacgaggagatccagtcctcgccgacgtactcttccggctacgcgttgcggttt
ccccggttcgtcggcgttcgcgaggacctagatccggacgacgccgacaccgtagaacga
gtccggtcgcttcgagagacgtga
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