Candidatus Nitrotoga arctica: NTG6680_1483
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Entry
NTG6680_1483 CDS
T08244
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
narc
Candidatus Nitrotoga arctica
Pathway
narc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
narc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NTG6680_1483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
narc03400
]
NTG6680_1483
Enzymes [BR:
narc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NTG6680_1483
DNA repair and recombination proteins [BR:
narc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NTG6680_1483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAG9932736
LinkDB
All DBs
Position
Ntg6680:complement(1582648..1584507)
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AA seq
619 aa
AA seq
DB search
MLQPQLATLVDAPPKDSVEWIYEIKFDGYRILTRISGKKVQLFTRNGNDWSHKLPTLVKA
IDEMNLESGWLDGEIVMLNEQGIPDFQALQGAFDSSMTQSIIYYLFDVPFYGGHDLRSAP
LIERRALLKTLFENPTPEQIRFSDVFDAPPGDIMATACHLGLEGVVGKRKSSTYVPRRST
DWIKLKCKQRQEFVIGGYTDPQGSRSLIGSLLLGVYDEKGELQYTGNVGTGFNEKTLKDL
KAKLDRIPADHSLFSKATDIDKKAHWVKPTLVAEVSFGEWTNSGHIRHSVFHGLRTDKKA
NTIIREKPMHSISTKPAPLPSLQASLHVTHPDRVIDSSTGLTKIDLVRYYSLVAPLILEH
LRGRPVSLVRAPAGVTGQLFFQKHLEKNSMPGVKHLDTALDPEHAALLEISTAEGILSAA
QMNVLEFHTWNATKSAIGKPDRMIFDLDPGEGVPWNIMQESAQLVREFLKELGLNSFLKT
SGSKGLHMVVPIKRLRDWDTVKDFSHAIVNHLAATLPQRFVAISGPDNRVGKIFIDYLRN
GFGATTVSAWSARARPGLGVSVPIAWEELKSLTSSDHWTVSNIHSRLDKGNDPWAEYNAS
AQSILSAMKALGFKPKVQK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagcctcaacttgcaacgctcgtggatgcgcctccaaaggactccgttgaatgg
atatatgaaataaaatttgatggatacagaatattgaccaggataagtggcaagaaggtt
caactgttcacgcgtaacggaaatgattggtcacataaattacctacgttggtaaaggcc
atagatgaaatgaatttagagtcgggatggcttgatggcgaaatcgtaatgcttaatgag
caagggattcctgattttcaagctttgcaaggtgcctttgatagctcgatgactcaaagt
attatttactacctttttgatgtgccattttatggcggacacgacttaagatcggctccc
ttgattgagcgtagggcactactcaaaacactctttgaaaatccaacaccagaacagata
cgtttcagtgatgtttttgatgcgccaccaggcgatattatggctacagcatgccacctg
ggattggaaggtgtcgttggcaaacgtaaaagctccacttacgtcccgcgccggtcaact
gattggataaaactgaagtgcaagcagcgacaagaatttgttattggtggttatacggat
ccgcagggctcccgttcgcttatcggctcacttctgcttggcgtttatgatgaaaaagga
gagctgcaatacacgggcaatgtgggcactggatttaacgaaaagactctcaaagatctg
aaggcgaagctggatagaattcctgctgaccacagtctatttagcaaagctactgatatc
gataaaaaggcacactgggtcaaaccaacactggtggctgaagtttcatttggtgagtgg
actaacagcgggcatatccgtcactctgttttccatggccttagaactgacaaaaaagcc
aataccattattcgtgagaaacctatgcattccatttccacaaagcctgcaccgctgcct
tcgctccaagcctcattacacgtaacgcatcctgatcgtgtcatagattcatccactgga
ctgacaaaaattgacctcgtacgctactacagcctggtcgctcctttaatcctggaacat
ctcagggggcggccagtttctttggtacgcgcccccgctggcgtcacaggccaacttttt
ttccagaaacatttggaaaaaaatagcatgccaggagtcaagcaccttgacactgccctt
gaccctgagcatgcggcattacttgaaatttcgaccgctgaggggattctgtctgcagct
caaatgaatgtgcttgaatttcacacgtggaacgccacaaagagtgctattggcaaacct
gacaggatgatatttgatctggatcctggagagggagtgccatggaatatcatgcaggaa
tcagcgcagcttgttcgcgagtttcttaaagagctggggctgaattcttttctcaaaacc
agcggaagtaaaggcttgcatatggtagtgcccataaaacgtctgcgcgactgggatacc
gttaaggatttctctcacgccattgttaaccatctggctgcaactctaccgcagcgcttt
gtagctataagtgggcctgacaatcgtgttggaaaaattttcattgattacttgcgtaac
ggttttggggctaccaccgtgtcggcttggtctgctcgcgctcgtccgggtttgggagta
agcgtgcctatcgcctgggaagaactcaaatcgcttacaagtagtgatcactggactgta
tcaaatattcacagtcgtctggataaagggaatgatccatgggcagagtataacgccagc
gctcaatctatattatccgcaatgaaggccttgggatttaagcctaaggtgcaaaaataa
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