Candidatus Nitrotoga arctica: NTG6680_2611
Help
Entry
NTG6680_2611 CDS
T08244
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
narc
Candidatus Nitrotoga arctica
Pathway
narc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
narc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NTG6680_2611 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
narc03400
]
NTG6680_2611 (mfd)
Enzymes [BR:
narc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NTG6680_2611 (mfd)
DNA repair and recombination proteins [BR:
narc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NTG6680_2611 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AAA_22
ERCC3_RAD25_C
DUF4217
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CAG9933860
LinkDB
All DBs
Position
Ntg6680:2741551..2745036
Genome browser
AA seq
1161 aa
AA seq
DB search
MLFSSSHSRPRYTHLYGSSDALALAQYAELHVPLVVIAASALEAQRLVEEIPFFSPELRV
HLLPDWETLPYDHFSPHQDLISERLATLHHIRSQSCDVIVVPITTALYPLSPVEYLAAFT
FFLKCGEKLDIAQLREQMTLAGYTHVQQVLTPGEYCVRGGLIDLFPMGSSVPYRIDLFDD
EIDTIATFDVDTQRTIYPVRDIRLLPAREFPLDEAGQACFRQNFRDRFEGDPSKASIYKG
VSRGIAPAGIEYYLPLFFERTATLFDYLPAHATLCMHHNVDAAIATFAKDAQSRYNLLRG
DPQRPLLEPHELFLNAESFFVAAKNFKRIDLITNTPSSSQTDNSEQKECVEETPPTLFQE
EKTHKTLTSCATKKLPGIAVNRRADIPTHALQSFLQDYAGRVLLLADSLGRREIMAEYLR
EYGLVPALCDNYAQFLAGNDHFMLTVGALQNGFILQDEQLAIITESELYAAQPRSRIART
TKKSNVEGMLRDLSELKPGDPVVHEQHGIARYHGLINLDLGEGENEFLLLEYAGGDKLYV
PVAQLHVISRYSGGAPETAPLHKLGSGTWDKAKRRAMQQVRDTAAELLNLYAQRATRKGH
QFKLSQHDYEAFAAGFGFEETPDQAAAIEAVVTDLQSGKPMDRLICGDVGFGKTEVALRA
AFIAAMDDKQVAVLVPTTLLTEQHFQNFCNRFADWPIKIGELSRFRSAKEQAQTLKDMED
GKLDIIIGTHKLIQKGIKFHNLGLIIIDEEHRFGVQQKERLKALRAEVDVLTLTATPIPR
TLAMSLEGLRDFSVIATAPQRRLSIKTFVSNYSQGVIREAVLRELKRGGQIYFLHNEVDT
IANMAEKLGTLLPEARIRVAHGQMGERDLEAVMRDFYQQRFNVLLCTTIIETGIDVPSAN
TIIMNRADRFGLAQLHQLRGRVGRSHHQAYAYLLVDNMEGLTAQAKKRLEAIQAMEQLGS
GFYLAMHDLEIRGAGEVLGESQSGEMHEIGFSLYTDMLNAAITSLRLGHEPDMAHPLGVA
TEINLHTPALLPNNYCGDIHQRLVLYKRMANCTTSEELDDMHQELIDRFGLLPPPAHTLL
DCHRLRIAAKQLGIVKVDASSEAIQIQFMPNPPIDPMRIITLIQSKRQYKLNGPDKLRIE
LKYGDVGQRVLAIKNFFHELS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttcttcctcacactcccgtccacgttacacccatctgtatggctcgtccgat
gccctggctctggcgcaatatgccgagctgcatgtgccgctggtggtaattgccgccagc
gcactggaagcgcagcgactggtggaagagattccgtttttctctcctgagctgcgtgta
catctgttgccggattgggaaacgctgccctatgatcacttctcgccgcatcaggatctc
atctccgagcgacttgctacgctgcatcatattcgcagccagtcgtgtgatgtgatcgtc
gtcccgataaccactgcgctatatccgttgtccccagtggaatatctggctgcgttcaca
ttctttcttaagtgcggcgagaaactggacattgcccagttgcgtgaacaaatgacattg
gccggttatacccatgttcagcaggtgctgacaccgggcgaatactgcgtgcgtggtggt
ttgattgaccttttcccgatgggcagtagtgtgccttaccgcatcgacttgttcgatgac
gaaattgatactatcgcgaccttcgatgtagatacccaacgcaccatttatccagtgcgg
gatattcgcctgttaccggcgcgcgagtttccactggatgaggccggacaagcatgtttt
cgtcaaaatttccgcgatcgtttcgagggtgatccatccaaagcaagcatttacaaaggt
gtgagccgtggcatcgcgcccgccgggattgaatattacctccccttgtttttcgagcga
actgccacattatttgattatttgcctgcacatgccacgctgtgcatgcatcacaatgtg
gatgctgccattgccacttttgcgaaagatgcgcagtcgcgctacaacctgcttcgcggt
gacccgcaacgtcctttactggaaccacacgaattgtttttgaacgcagaaagtttcttt
gttgctgcgaaaaatttcaaacgtatcgatctcatcacaaatactccctcttcctcccaa
actgacaattccgagcagaaagaatgcgtagaagagactccccctactctctttcaagaa
gaaaagacacataaaacccttacttcttgcgctaccaaaaaattgcccggcatcgcggta
aatcggcgcgccgacattccgacacatgcacttcaaagctttctacaagattacgctggc
cgggtattattgctcgccgacagtttggggcggcgcgaaataatggccgagtatttgcgc
gaatacggcctggtacctgcactgtgtgataactatgcgcaatttctcgccggtaacgat
cacttcatgcttaccgtaggggcgctgcagaatggtttcattctgcaagatgaacaatta
gcaattatcacagaaagtgagctgtatgccgcgcagccacgcagccgaattgcgcgcacc
acaaagaaaagcaatgtggaaggaatgctgcgcgacctgtcggagctcaagccgggcgat
cctgtggtgcatgaacagcatggcatcgcgcgttatcatggcctgataaaccttgatctc
ggcgaaggcgagaacgaatttttgttgctggagtacgccggtggagacaagttgtatgtt
ccagtggcacagctgcatgtaatcagccgttacagtggtggagccccggaaaccgcaccg
ttgcataagttgggcagcggcacttgggacaaggccaaacgtcgcgccatgcagcaggtg
cgcgataccgctgccgaattgctcaatctgtatgcccaacgcgccacgcgcaaaggtcac
caattcaaactgtcacaacatgattacgaggcgttcgccgccggttttggttttgaagaa
acacctgatcaggccgccgccattgaggcggtggtcactgatctgcagagcggcaaaccc
atggatcggctaatctgcggcgatgtgggttttggtaaaacggaagtggcgctgcgtgct
gcctttattgcggcgatggatgataaacaagtagcagtactggtacccaccacgctgctc
acagaacaacatttccagaacttctgcaatcgttttgccgactggcccatcaaaattggc
gaactgtcgcgcttccgctccgctaaggaacaggctcaaacactgaaagacatggaagat
ggcaagctagacattatcatcggcacgcacaagctgatccagaagggtattaaattccat
aacttgggactgatcatcatcgacgaggaacaccgtttcggcgtgcagcagaaggagcgc
ctcaaggcgctacgcgccgaagttgacgtgctcaccctgaccgccacgcctatcccgcgc
acgctggcaatgtctttggaaggcctgcgcgatttctcggtgattgccactgcaccgcag
cgccgtctgtccatcaagaccttcgtcagcaactacagccagggcgtcatccgtgaagcg
gtgctacgcgaactgaagcgcggcggacaaatctatttcctgcacaacgaggtagacacc
atcgccaatatggcggaaaaactgggtactttactgcctgaagcacgtatccgagtagcg
cacggccagatgggagaacgcgacttggaagcggtcatgcgtgatttttaccaacagcgc
tttaatgtgctgctatgcaccaccatcattgaaaccggcattgatgtacccagtgccaat
accatcatcatgaaccgcgcggaccgttttggattggcgcagctacatcagttgcgcggc
cgggttgggcgctcgcaccaccaagcgtatgcctatttattggtggacaatatggaggga
ctgaccgcacaggcgaagaaaagattggaagctatccaggccatggagcaactaggaagc
ggtttctatcttgcgatgcatgatctggaaattcgcggcgcgggcgaggtgctgggcgag
tcacaaagcggtgagatgcatgagattggtttttcactctacacggatatgctcaacgcg
gccattacctcgctcagactgggccatgaaccggacatggcccacccacttggggtcgcc
accgaaattaacctgcatacccccgccttgctgcccaacaattattgcggcgacattcac
caacggctggtgctgtacaaacgtatggccaactgcaccacatcagaagaactggacgac
atgcatcaggagctgatagaccgcttcggtctactgccgccgcctgctcatacattgctt
gattgccaccgtctgcgcatcgctgccaagcagctcggcattgtcaaggtggatgcttcc
agcgaggcgattcaaattcagttcatgccaaatccgcccatagatccgatgcgcatcatc
acgctcatccagagcaagcgccaatacaaattgaatggtccggacaaactgagaattgaa
ttaaaatacggcgatgtcggccagcgtgtgttggcaatcaagaacttttttcatgagcta
tcataa
DBGET
integrated database retrieval system
