Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112405574
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Entry
112405574 CDS
T08872
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112405574 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nasi03400
]
112405574 (LIG4)
Enzymes [BR:
nasi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112405574 (LIG4)
DNA repair and recombination proteins [BR:
nasi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112405574 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
112405574
NCBI-ProteinID:
XP_024609800
UniProt:
A0A341C4M3
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKELLDSWRKFHDALHKNQKGV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTATRG
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIANNNSAQRKDLVKKSLLQLITQSSA
LEQKWLIRMILKDLKLGFTEQTVFAVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLASIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYED
QFGSSPQEGSLTPFIHNAFKTDVQNCILDGEMMAYNPNTQTFMQKGSKFDIKRMVEDSDL
HTCYCVFDVLMVNDKKLGQETLRKRYEILNSVFTPIPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLVDELDILIVGGYWGKGSRGGMM
SHFLCAVSEKPPPGEKPSVFHTLCRVGSGYTKKELYDLGLKLAQHWKPFHRKAPPSCILC
GTEKPEVYIEPWNSVIVQVKAAEIVPSGMYKTGCTLRFPRIENIRENKEWHECTSLEDLE
QLRGKASGKLASKHLYVGDDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLSNINKVSNIFE
DVEFCVMSGTKSHPKPDLENRIAEFGGYVVQNPGPDTYCVIAGCENIRVKNIISSDKHDV
VKPEWLLECLETKSCVPWQPRFMTHMCPSTKQHFAREYDCYGDSYFVDTDWNQLKEVFSG
IKNAGEQTPREMDPVIADLEHRYSWDNTPLSMFRHHTVFLDLYTVINDLSTKIEGARLAV
TALELQFHGAKVVSCLAEGVSHVIIGEDQSRLADFKAFRRTLKRKFKILQERWVTESIDK
RELQEENQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacttcacagactgttgcatctcacgttccttttgcagatttatgt
tcaactttagaacgaatacagaaaagtaaaggacgtgcagaaaaaatcagacacttcaaa
gaacttttagattcttggagaaaatttcatgatgcccttcataagaaccaaaaaggtgtc
acagattctttttatccagccatgagacttattcttcctcagctggaaagagagagaatg
gcctatggcatcaaagaaactatgcttgctaagctttatattgaattgcttaacttacct
cgagaaggaaaagatgccctcaaacttctaaactacagaacacctaccgcaactcgtgga
gatgctggagactttgcgatgattgcatactttgtgttgaaacccagatgtttacagaag
ggaagtttaaccatacagcaagtaaatgaccttttagactccattgccaacaataattct
gcccaaaggaaggacctagtaaagaagagtcttcttcagcttataactcagagttcagca
cttgaacaaaagtggctgatacggatgattttaaaggacttgaagcttggctttactgag
caaactgtatttgctgtctttcataatgatgctgctgagttgcataatgtcaccacagat
ctggaaaaggtctgtaggcaactgcatgatccttcagttggactcagtgacatttctatc
actttattctctgcatttaaacccatgctggcctctatagcagatatcgagcgaattgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctggacggtgagcgtatgcag
atgcacaaggatggggacgtgtatcggtacttctcccgcaacggctataactatgaggat
cagtttggctcttccccacaggaaggttcccttacaccgttcatccataatgcattcaaa
acagatgttcaaaactgtatcctcgatggtgagatgatggcctacaaccctaatacacaa
acttttatgcaaaaggggagtaagtttgatattaaaagaatggtcgaagattctgatctg
cacacttgttactgtgtttttgatgtattgatggttaatgataaaaagctaggccaggag
acactgagaaagaggtatgaaattcttaatagtgtttttacaccaataccaggtagaata
gaaatagtgcaaaagacacaagctcatactaagaaagaagtaattgatgctctgaatgaa
gcaatagataaaagagaagaggggatcatgataaaacatcctctgtccatttacaagcca
gataagagaggtgaagggtggttaaaaattaaaccagagtatgtagatgggctggtggat
gaactggacatcttaatcgtggggggctactgggggaaaggttcccggggtggaatgatg
tctcattttttgtgtgcggtgtcagagaaaccccctcctggtgaaaaaccatcagtgttt
catactctctgtcgcgttggctcaggttacaccaagaaagaactgtatgacctgggtttg
aagttggcccaacactggaagccttttcataggaaagctccaccaagttgcattttatgt
ggaacagagaagccagaggtctacatcgaaccttggaattcggtcatcgttcaggttaag
gccgcagagattgtccccagtggtatgtataaaactggctgcacgttgcgttttccacga
attgagaacataagagaaaacaaagaatggcacgaatgtacatctctggaggacttagaa
caacttcgagggaaagcctctggaaagctcgcatctaaacacctttatgtgggtgacgat
gatgaaccacaagaaaaaaagcggaaagctgccccaaagatgaagaaagttattggaatt
attgagcacctaaaagcacccaacctctctaacataaacaaagtttctaatatatttgaa
gatgtggagttttgtgtcatgagtggaaccaagagccatccaaagcccgatctggagaac
agaatcgcagaattcggtggttacgtagtccaaaatccaggcccagacacatactgtgtg
atcgcagggtgtgagaacattcgagtgaaaaacatcatctcttctgataaacacgacgtc
gtcaagcccgagtggctgttagagtgtttagagaccaaaagctgtgtgccgtggcagcct
cgcttcatgactcacatgtgcccgtccacaaaacagcactttgctcgggaatacgactgc
tacggggatagttactttgtcgatacagattggaaccaactgaaggaagtgttctcggga
attaaaaatgctggtgaacagactcctagggaaatggatcctgtgattgccgatttggaa
caccggtattcctgggacaacactcctcttagcatgtttcgacaccacaccgtttttttg
gacttgtatactgttattaatgacctaagtactaaaatcgagggggcaagattagctgtc
acagccctggagcttcaatttcatggagcaaaagtagtttcatgcttagctgagggagtg
tctcatgtcatcattggggaggatcagagtcggcttgcagactttaaagcttttcgaaga
actctgaagagaaagtttaaaatcctacaagaacgttgggtaactgaatcaatagacaag
agggaattacaggaggaaaatcaatatttgctttga
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