Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112414816
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Entry
112414816 CDS
T08872
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03013
Nucleocytoplasmic transport
nasi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112414816 (UPF1)
03015 mRNA surveillance pathway
112414816 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nasi03019
]
112414816 (UPF1)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112414816 (UPF1)
5.6.2.5 RNA 5'-3' helicase
112414816 (UPF1)
Messenger RNA biogenesis [BR:
nasi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112414816 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112414816 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112414816
NCBI-ProteinID:
XP_024623245
UniProt:
A0A341D925
LinkDB
All DBs
Position
Unknown
AA seq
1289 aa
AA seq
DB search
MPGASQPPNTRRVPVARAKRGCPGSRKQRQPPARRAGTPSAQQQVEKESTSSFCIRILLK
ANSNTTRRGGCILAVLPPDGSKLTTKSATNLCPSATEQRLGRDHVLERLLRRQLEAPPPT
RARCASRRPARLRESGRGWRRPQGVRAPAPASGSRTRTCAGVGLAHAHRPSSQTLTFLDT
EEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPVCAGPGAAAGQLDAQVGGP
EGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGD
LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKT
FAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSL
IQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSR
EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMN
ADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAD
RVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ
IGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQG
IGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRES
LMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMI
SAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPG
PSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKS
QIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgcctggagccagccagccgccaaacactcggcgagtccctgtggccagggccaagcga
ggctgtccaggttccaggaaacagcgccagcctccggccaggcgcgccgggacgccgagt
gctcagcaacaagtggaaaaagaatcaacaagttccttctgcatccgtatcctcttaaaa
gccaacagcaacacgacacggaggggaggctgtatcctggctgtgttgcctccggatggc
agtaaactgacgaccaagtccgcaaccaacctctgccccagcgccacagagcagcggttg
gggcgggaccacgtactggagcgtctgctgagacggcagttggaagccccgccccccacg
cgtgcacgttgcgcgtcccgtcggcccgctaggctccgggagtccgggcgcggttggagg
cgtcctcaaggagtgcgcgcgcctgcgccggcgtcgggctcgcgcacgcgcacctgcgcc
ggcgtcgggctcgcgcacgcgcacaggcccagctcgcagacgctcaccttcctggacact
gaggaggccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttc
actctccccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggcc
ccggtctgcgcgggcccgggagcggcggccggacagctcgacgcacaggtcggtggacct
gagggcatcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttg
gccgagttgaacttcgaagaagatgaggaagatacctattacacgaaggatctccccata
catgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagc
aagaagtggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctc
gtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggtt
ctggagtgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaag
gctgactcggttgtggtgctgctatgcaggcagccctgtgccagtcagagcagcctcaag
gacattaactgggacagctcgcagtggcagcccctgatccaggaccgttgcttcctgtcc
tggctggtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccag
cagatcaacaagctggaggagctctggaaggaaaatccttctgccaccttggaggacctc
gagaagccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctac
cagtaccagaacattttcggtcctctggtcaagctggaggctgactacgataagaaactc
aaagagtcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggac
ctggcgcccctatggaaagggatcggccacgtcatcaaggtccctgataattatggcgat
gagatcgctattgagcttcggagcagtgtgggtgcacccgtggaggtgactcataacttc
caggtggatttcgtgtggaagtcaacctcattcgacaggatgcagagtgcgttgaaaacc
tttgctgtggacgagacctccgtgtcgggctacatctaccacaaacttctcggccacgaa
gtggaggatgtgatcatcaagtgccagctgcccaagcgcttcacggcgcaggggctccct
gacctcaaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagtctg
atccagggcccaccgggcacggggaagacggtgacctcagccaccattgtctaccacctg
gctcggcaaggcaatgggcccgtgcttgtctgtgctccaagcaacatagccgtggatcag
ctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgtgccaagagccga
gaggccatcgattccccggtgtcgttcttggccctgcacaaccagatcaggaacatggac
agcatgccagagctccagaagctgcagcagctgaaggatgagactggcgagctgtcgtct
gcggacgaaaagcggtaccgggccctgaagcgcactgccgagagggagctgctcatgaat
gcagatgtcatctgctgcacgtgtgtgggcgccggggacccgaggctcgccaagatgcag
ttccgatccattttaatcgacgagagcacccaggccaccgagccagagtgtatggtccct
gtggtccttggagccaagcagctgatcctcgtgggcgaccactgccagctgggccccgtg
gtgatgtgcaagaaggcggccaaggccgggctgtcccagtcgctctttgagcgcctggtg
gtgctgggcatccgtcccatccgcctgcaggtccagtatcggatgcatcctgcgctcagt
gccttcccatccaacatcttctatgagggctctcttcagaatggtgtcactgcagcggat
cgtgtgaagaaggggtttgacttccagtggccccaaccggataaaccgatgttcttctac
gtgacccagggccaagaggagattgccagctcaggcacctcctacctaaacaggacggag
gctgcaaatgtggagaagatcaccacgaagctgctgaaggcaggtgccaagccagaccag
atcggcatcatcacgccgtacgagggccagcgctcctacctggtgcagtacatgcagttc
agtggctccctgcacaccaagctctaccaggaggtggagattgccagcgtggatgcgttc
cagggccgcgagaaggacttcatcatcctctcctgtgtgcgggcgaatgagcaccaaggc
attgggtttttaaacgaccccaggaggcttaatgtggccttgaccagagcacgatacggg
gtcattattgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctgctg
aactactacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgggagagc
ctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttc
atgacaacagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgaccgg
agcagccagggccggccctcgaacatgtacttccagacccatgaccagattggcatgatc
agtgctggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatg
ccgcccatgccgccaccggggtattttggacaagctaatgggccagccgcaggccggggc
accccaaaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagacgaatctccccaatagccaggccagccaggatgtggcgtcacagcccttc
tcacagggcgctctgacccagggctacatctccatgagccagccctcccagatgagccag
cccggcctctcccagcctgagctgtcccaggacagttaccttggagatgagtttaagtca
cagattgatgtggcgctgtcgcaagactccacgtaccagggggagcgggcgtaccagcac
ggcggagtgacggggctgtcccagtattag
DBGET
integrated database retrieval system
