Nicotiana attenuata (coyote tobacco): 109234616
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Entry
109234616 CDS
T05870
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109234616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109234616
Spliceosome [BR:
nau03041
]
Complex A
U1 snRNP components
U1 related factors
109234616
Complex B
109234616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
TetR_C_11
Motif
Other DBs
NCBI-GeneID:
109234616
NCBI-ProteinID:
XP_019256218
UniProt:
A0A1J6II28
LinkDB
All DBs
Position
11:59944890..59968938
Genome browser
AA seq
1033 aa
AA seq
DB search
MASNPPPSGPQPHWPPSVGSTPPQGFGPSFPMQFRPAVSTQQGQPFASSFSASPQYRPVG
QTSNAGMPPGHHGQIPQFSQPMQQFPPRPSQPGHGILSSQAIQMPFIQSSMPQPQQVIPP
LNSHMPGVSGAGNPFSSSYTVQSSSQMHVPPFPPGGQPWLSSGSQTTPVAAPNLLTSQQL
SAIAPSVPAGTASQQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTPLERADASTV
WKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEKSAGQVVQTGASTISGVQVTAAV
TSTEQPSAVTPVSSTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSS
GVSSPAVSGSTGSAALANASQTQMSGFENLSPQVASSLSGASIQDIEEAKKGMAVAGKVN
VVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTL
GERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDE
RFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRQNRLEYRQFLETCGFIKVDTQWRKV
QDLLEDDERCLRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEKLRRTERKNRDAFRKMME
EQIAAGTLTAKTSWRDYCQMVKESVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIR
IKDVVKSEKITISSTWTFEDFKAAILEGIGSPSIHDVNLQLIFEDLIERAKEKEEKETKK
RQRLAKDFTDKLSTIKEITASSSWEECKELVEDSSEFRAIGEETISRAVFEEYVALLQEK
AKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKEREKEKERGKERSTKDEADSE
SMDVTDNYEPKEERKREKDKERKHRKRHHISNDEVTSDKDEKEEPERDKERKHRKRHHSS
NDEVASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGYE
ELEDGELGEDGES
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctccgccatctggtccacagcctcattggcctccttcagttggatcc
acaccacctcaaggttttggtccatcatttcccatgcaatttcgacctgctgtatcaaca
cagcaaggccagccctttgcttcatcattttcagcctctccacagtatcgccctgttgga
caaacatcaaatgctggaatgcctcctggtcatcatggtcaaataccccagttttctcaa
ccaatgcagcagtttcccccaaggcccagccagcctggccatggtatactttcatctcag
gcaattcagatgccatttatccaatcaagtatgccacagcctcaacaagtcattccgcct
ctgaatagtcacatgcctggtgttagtggtgctggaaatccattctcatcatcatatacg
gttcaatcgtcatcccaaatgcatgttcctcctttccctccggggggacaaccttggctg
tcatctggaagtcaaaccacaccagtggctgcccctaatttactgaccagtcagcaattg
tcagctatagctccatcagttccggcgggcacagcttcacaacagaatgcgtctgactgg
caagagtatgaagctgctgatgggagacgatattattacaataaaattacaaagcaatcc
agctgggagaagcctttggagctgatgacacctttagagagagctgatgcgtcgacggta
tggaaagaattcacaactgcagatggtcgaaaatattactacaacaaagaaacaaagcag
tctaagtggacaatacctgaggaactaaagttggctcgtgaactggcggaaaaatctgct
ggtcaagtagttcagactggagcaagcacaatttctggtgtccaagtcactgcagctgta
acttcaacagaacaaccatctgctgtcacaccggttagctccaccccttcttcaacggtt
tctggagtagcttcaagccctgttccagttacatctgctgtttctgatcatgcttcacct
ctggtggtttctggatcatcagccattcctgctgtgacccctgcgatgccaagttcatct
ggtgtctcttcacccgctgtttcagggagtacaggatctgctgctctagctaatgccagt
cagacacaaatgagcggctttgaaaatttatctcctcaagttgctagttctttaagtgga
gcttctattcaggatattgaggaggcaaagaagggcatggcagttgctgggaaggttaat
gtggtacctgcagaggagaaaacaacagaagaagaaccttttctatatgcgaccaagcag
gaggctaaaaatgcgttcaaagcgctgctagagtttgctaatgttgaatctgattggaca
tgggagcagacaatgcgagtaataatcaacgataagcgatatggcgctctgaaaactctt
ggtgagcggaaacaggcattcaatgagtacttgatgcaaaggaagaaacaggaggctgag
gagaggcgccatagacaaagaaaggcaaaagaagaattcacaaagatgttagaggagtcc
aaggaactcatttcatctactagatggagtaaggcagtaaccatgtttgaggatgatgaa
cggttcaaggccgtcgaacgagaggctgatcgtgaagatctcttcaggaactacttggtg
gatcttcagaaaaaggagagggcaaaggctcaagaggagtatcgacaaaatagattggag
tacagacaatttttggagacttgtggctttatcaaggtagatacccagtggcgcaaagtc
caagatcttctggaagatgatgaaagatgtttgcgccttgaaaaaattgatcgtttagat
attttccaggaatacatccgtgacctggagaaggaggacgaagaacagagaaaattgcaa
aaggaaaaactgaggcgcacggagcgtaagaaccgggatgcatttcgaaagatgatggag
gagcaaatcgctgcaggcacgcttactgcgaaaacatcttggcgcgattattgtcagatg
gttaaggagtctgtggcttatcaggctgttgcatcaaacacttctggttcgacaccaaag
gatttgtttgaagatgtcgttgaagagttggaaaaacagtaccatgaagacaagattcga
ataaaagatgtagttaagtcagaaaagatcacgatctcgtcaacatggacattcgaagac
tttaaagctgctattttggaaggaattggttccccatccattcatgatgttaatctacag
ctcatttttgaggatctaattgagagagcaaaggagaaggaagaaaaagaaactaaaaag
cgtcaaaggcttgcaaaagatttcactgacaagcttagtaccattaaggaaataactgct
tcctctagttgggaggagtgcaaagaactcgtggaggacagctcagagttcagagctatt
ggtgaagagacaatctcaagggcagtctttgaggaatatgttgcattgttgcaggagaag
gcaaaggaaaaggaacgcagacgagaggaggaaaaggccaaaaaggagaaagaaaaagag
gagaaagagaagagaaaggataaggagagaagggaaaaagagagagagaaggaaaaagag
cgtgagaaggaaaaagaaaggggaaaagagcgatcaacaaaagatgaggcagatagcgag
agcatggatgtaacagataactatgagcccaaagaagagagaaaaagagaaaaagacaaa
gagaggaaacatcggaagcgacaccatatctctaacgatgaggtgacttctgacaaggat
gagaaagaggaacctgaaagagacaaggaaaggaaacaccggaagcgacaccatagctct
aacgatgaggtggcatctgacaaggacgagaaagaggaatctaaaaggtcccgccgacat
agcagtgatcgtaaaaagtcaaagaagcttgcacactcacctgaatccgatggtgaaagt
cggcataaaagacacagaagagatcatagggatggatcacgtcgaaatggtggttatgaa
gagttagaagatggggagcttggtgaagatggagaaagttga
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