Nicotiana attenuata (coyote tobacco): 109239145
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Entry
109239145 CDS
T05870
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03013
Nucleocytoplasmic transport
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109239145
03015 mRNA surveillance pathway
109239145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109239145
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109239145
mRNA cycle factors
P-body specific factors
109239145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
109239145
NCBI-ProteinID:
XP_019261212
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MKGPLDRTKVVLRHLPPTISQSMLVEQVVSRFTGRYNWFSFRPGKSSQKHQTYSRAYVDF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTVVEYAPSQRAPKRWSKKDGREGTILKDPEYLE
FLEFIAKPIEYLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSLSNG
RPTRRADGTSSGSPSSSASKQGSEKRRVSTTMYVLRDSSKAGSGKDRRHILVPKRDGQQQ
AEKSGTSAPGSGADAVEEETGGAADVGKKKILLLKGKEKEIPNVSSGSLIQGNVAPIVKN
TITSAAPQQNQRREASGKIIRSILLKDAHQNQAPSASQQEQHSQDKDKKPPRPPSVQLFQ
KEINGVNEDKVVGTDLHVVHTEKQERRSRIRDRPDRGVWTPLRRSDRLHASDESLSSSTS
QSSEVLDSLEGSRGETKNDLPNVRGGEFRPMGSGRNSHSSFDNGTYKRRGMRDDGISVGE
GKPLRRGGPSNYGTHEKQVWVQKSSSGT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaccgttagatcgaacaaaagtagtgctgcggcacttgccgccaacaatttct
cagtctatgcttgttgagcaagttgtttcccgattcactggtcgctacaactggttctct
tttcgtcctggcaagtccagccagaagcatcaaacctattcaagagcctatgttgacttt
aagaggccagaagatgttatcgagtttgccgagttctttgatggacacgtttttgtaaat
gagaaaggcactcagttcaaaactgttgttgagtatgctccttcacagcgtgctccaaaa
cgctggtccaagaaggatggccgcgaaggaaccatcttgaaagatcctgaatatctggag
ttccttgaatttattgcaaagcctatcgagtatcttccgagtgcagaaatacaattggaa
agaaaggaagctgaacgagctggttctgcaaaggatgctcctatagttactcctttgatg
gactacatacgtcagaaaagagctgccaagagtggagctcggaaatctctatctaatggg
agaccgaccagaagagcggacggcacatcctcaggaagtcctagctcaagtgcgtctaaa
caaggctctgaaaagagaagggtttctacaaccatgtatgttcttcgagatagttctaag
gctgggagtggcaaagacagaagacatattttagttccaaaacgtgatggtcagcagcag
gctgagaagtctggtacctctgctcctggatctggggctgatgcagttgaagaggaaact
ggtggagctgctgatgttgggaagaagaaaatcctgctcttgaagggaaaggaaaaagaa
attcctaacgtttctagtggctcattgattcagggcaatgtggcacctattgtaaagaat
acaataacatcagctgctccgcaacagaaccagcgccgagaggcaagtggaaagatcatt
agaagtattcttctcaaggatgctcatcaaaatcaggctccttctgcatcccaacaagaa
cagcacagccaggataaggacaaaaagcctcctaggccaccaagcgtgcagttgtttcag
aaagaaattaacggagttaatgaggataaggttgttggaactgatttgcatgttgtccac
actgaaaagcaggaaagacgctctaggattagggataggcctgatcgtggtgtttggact
cctcttcgtcgttccgataggttgcatgctagtgatgaatccttgtcttcatctacctct
caatcttctgaagtgctggattctcttgaaggaagtcggggtgaaaccaaaaatgatctg
ccaaatgttcgtggtggggagttcagacccatgggaagcggacgtaattctcattcttct
tttgacaatggtacttataaacgtcgtggtatgagggatgatggcatttcagtaggggaa
ggaaaacccttaagaaggggaggtccttctaactatggtacccatgagaaacaagtgtgg
gtccaaaagtcaagttctggtacttaa
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