Nicotiana attenuata (coyote tobacco): 109244121
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Entry
109244121 CDS
T05870
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03022
Basal transcription factors
nau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109244121
09124 Replication and repair
03420 Nucleotide excision repair
109244121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nau03021
]
109244121
03400 DNA repair and recombination proteins [BR:
nau03400
]
109244121
Transcription machinery [BR:
nau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109244121
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109244121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
109244121
NCBI-ProteinID:
XP_019266702
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All DBs
Position
2:9970859..9978876
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AA seq
453 aa
AA seq
DB search
MPQVKIVARNFMDMVASLPAVKLDMLYDNSFICEAILRSLPPLAKKYVLQLLYIDIPISA
KSMEESVLPDGFSKHKVAIDRLIQLRVMTETFDRKKEAMYQLSPKFQFNLQKHIVHGGVL
PREPMPSNITVRLPSLEELEAYAVEQWECFLLHLISSSEAGKTTNISSSMMKVFQRGLLS
QRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTG
KAYNTNTLTDIQRSITKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTSRKQGFI
VIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISF
LQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMMPAHLYDEFPSRDVFEAACDFARE
YGGLLWEDSKQMRIIVKADILTEMKEFLRRQKQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgccacaagtgaagatagtggccaggaatttcatggacatggtggcttcattgcctgca
gtgaagctcgacatgctctacgacaattcctttatctgtgaagccatcctcagatcgtta
cctcccttagcaaagaagtatgtgctacaattgttgtatatagacataccaatctcggcc
aagtcaatggaggagtcggtgcttccagatggattctcaaagcataaagttgccattgat
agattgatacagctgagggtaatgacggaaacatttgacaggaagaaggaagccatgtat
caattaagtccaaaatttcaatttaatcttcagaagcatatagtccatggtggagtctta
ccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagag
gcatatgctgttgaacaatgggagtgctttctgctgcatcttataagctccagtgaagct
ggaaagaccacaaacataagctcttcaatgatgaaagttttccagcgtggccttttaagt
cagagagatgacagggaacctccaaggttgactgaaagtgggttccagttcctgctgatg
gacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcga
ggtgtggattcagcagatcttattgcattcctgttggagctaagctttcatgttactggc
aaggcatacaatacaaacacattaactgatatccagcgaagtataactaaggacctttca
gatttgggactggtcaagctgcagcagggaaggaaagagagttggtttattcccaccaaa
cttgccaccaatctgtcaattagcttagcagatacaacgtccaggaaacagggatttatc
gttattgaaacaaacttcaggttgtatgcatattcaacatcaaaattacactgtgagatc
ctacgcctctttgcaagggtggagtaccagcttccaaatctcattgtcggtgctattaca
aaagaaagtttgtataaagcttttcaaaatggcattactgctgagcagataatttctttc
cttcagcagaatgcccatcctagggttgcagagaggataccatccgtgccagagaatgtt
actgatcagattagattgtgggaatcagatctgaatcgggttgagatgatgcccgcccac
ctctacgatgaattcccttctagagatgtctttgaggctgcatgtgattttgccagggaa
tatggaggattactgtgggaggactctaagcaaatgcgcatcatagttaaggctgatatt
ttgacagagatgaaggaattccttcgtcgtcaaaagcaatag
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