Natronoglycomyces albus: JQS30_12480
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Entry
JQS30_12480 CDS
T07203
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nav
Natronoglycomyces albus
Pathway
nav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JQS30_12480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nav03400
]
JQS30_12480 (mfd)
Enzymes [BR:
nav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JQS30_12480 (mfd)
DNA repair and recombination proteins [BR:
nav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JQS30_12480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSB04582
UniProt:
A0A895XLA8
LinkDB
All DBs
Position
complement(2901730..2905362)
Genome browser
AA seq
1210 aa
AA seq
DB search
MTEPQLLPLLNAAAHAPALRKLTDLASQDHPTALDLVAVPGARPTALAAVARQLSDGILL
VITATSREAEELTAALAAYLPEENIGYYPAWETLPHERLSPRSDTVGRRIQLLHRLVGHS
NEHTAPLKVVVTPVRGALQPQLKGLGKLRPIRLREGDEQDLTSLANALHDLAYERVDLVE
KRGQFALRGGILDVFPPTAEYPIRLEFFGDEIDSLRYFSVADQRSLDKVPELIAEPCREL
LLTPEVRQKAQELAHTYPNLADMCSKLAEGIPQEGMESLLPVLCGADQMELLHENLPARS
LVVAVEPERISSRAHEMVATSTEFLEASWSAAAAGSEAPIDLGAVTFRDLAQARTSALAL
GHGWWTISPFASAPEESDSAAAELAAITGESGLALSAEFDNHVSVQMAAAAAPRYHGNSK
DLVHDVKRWTAEGWQVALVYPAIGGAKRAAEQLGDFGVGARVEAKPEQMEAGTVLVCVGP
LPVGFVDETARLAVITAADVAGGKISAGARQARRAPARRKGAVDPLELKEGDYVVHQQHG
VGKYIEMVRRTIGGAQREYLVIEYAPSKRGQPGDRLFMPTDSLDQLSRYVGGEMPTVHKL
GGSDWTKAKNRARKAVKEIAAELIRLYAARQATQGHAFAPDTPWQQELEDSFAFIETPDQ
YQAIVDTKRDMEAVMPMDRLVCGDVGYGKTEVAVRAAFKAVQDGKQVGILVPTTLLASQH
LKTFQERMGQFPIRIRQLSRFQTLSEARQIQEGLAKGEIDIVIGTHRLLQSETRFKDLGL
LIVDEEQRFGVEHKEKLKALRASVDVLTMSATPIPRTLEMAVTGLREMSTIATPPEERHP
VLTYVGAWEAKQVAATIRRELLRDGQVFYLHNRVESIDKAARTLRDLVPEARIATAHGRM
GEKQLEQIMQGFWEGEYDVLISTTIVESGIDIPNANTLIVERADHLGLSQLHQIRGRVGR
GRERAYAYFLYPPEQPLSDTAHERLATIAQHSELGAGMYVAMKDLEIRGAGNLLGAEQSG
HIADVGFDLYLRMVGDAVRRYKGAKDEQLPPVKIELPVEAHLPVDYISVERLRLEMYRKI
AEVRDEAELDAVREELEDRYGALPDSVENLLHVANFRLLARRFGLQEVALQGRNLRFSRV
TLPDSKQMRLKRHYPEAVYKDTAGLISIKRPSTARVGGTPMEGLPLLQWCADLITDVFPQ
PSDHSQPVAN
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaccgcaacttctcccactactcaatgccgccgcacacgctccggctctgcgc
aaactcaccgacctggccagccaagaccaccccacggcactcgacctggtcgccgtaccc
ggagcccggcccaccgcgctggccgctgtggcccgacaactcagcgatggaatcctcctc
gtcatcaccgcaaccagccgcgaagcggaggaactcaccgccgctctcgccgcctacctg
cccgaagagaacatcggctactacccggcctgggaaaccctcccgcacgaacgcctctcc
ccgcgctcggacacggtgggccgccgcatccaactgctacaccgactcgtcggtcactcc
aacgagcacaccgcgccgttgaaagtcgtcgtcacacccgtacgcggagctttgcagccc
caactgaaaggtctggggaaactgcggcccatccgcctgcgcgaaggcgacgaacaagac
ctgaccagcctggccaatgccttgcacgacctcgcctatgagcgcgtcgacttggtcgaa
aagcgcggccagttcgccctacgcggcggcatcctcgacgttttcccacccacggccgaa
tacccaatccggctggaattcttcggcgacgaaatagactccttgcgctacttttccgtt
gccgatcaacgctcccttgacaaggttcccgagctcatcgccgagccctgccgggagctg
cttctcacccccgaggtccgccagaaagcccaggagctggcgcatacctatccaaacctg
gcggatatgtgctcaaaacttgccgaaggtatcccacaagaaggcatggaatcactcctg
ccagtcctgtgcggggccgaccaaatggagctactccacgagaacctccccgccagatcg
ctggtggtggccgtcgaaccagagcgcatcagctcccgcgcccatgaaatggtcgccacc
tccaccgaatttctcgaagcctcttggtccgcggccgccgcaggatccgaagcacccatc
gacctaggagcggtcactttccgcgacctcgcccaggcacgtacctcggctctggcccta
ggccatggctggtggaccattagccccttcgcctcggcgccggaggagtccgactccgcg
gccgctgagctagccgccatcaccggtgaatcgggccttgcgctgtcagccgaattcgat
aaccatgtttcggtgcagatggccgccgcggccgccccgcgctatcacggaaactccaag
gacctcgttcacgatgtgaagcgctggacagctgagggttggcaagtcgccttggtctat
cccgcgattggcggggccaaacgcgccgccgaacagttgggagacttcggcgttggcgcc
cgagtggaggccaaacccgagcagatggaggccgggacggtcctggtatgcgtggggccg
ttgccagtgggtttcgtcgatgagaccgcccgcctggctgtcatcaccgccgccgatgtg
gctggcggcaagatatccgctggcgctcgccaagctcgccgcgcaccggcccgccgcaag
ggagcggtcgatcctctcgaactcaaagaaggcgactacgtcgtccaccagcagcacggc
gtcggcaaatatatcgaaatggtgcgccgcaccatcggtggagcccagcgggaatacctc
gtcatcgaatacgccccctccaagcgaggccagcccggtgaccggttgttcatgcccacc
gactcactcgaccagctgtcgcgttacgtgggcggcgaaatgccgactgtgcacaagctg
ggaggctccgactggaccaaggcgaagaatcgggcgcgtaaggccgtcaaggagatcgcc
gccgagctgatccgtctatacgcggcccgccaagctacgcaggggcacgccttcgcgccc
gatacgccttggcaacaggaactggaggattcgtttgcctttatcgaaacccccgaccag
tatcaggccatcgttgacactaagcgcgatatggaagccgtcatgccgatggatcgcctg
gtatgcggggatgttggctatggaaagaccgaagttgccgtgcgggccgcgttcaaagcg
gtgcaagacggtaaacaagtcggcattctcgtacctacgacgttgttggccagccagcac
ttgaagacatttcaagagcgtatgggccagttcccgattcgtatccggcaactgtcgcgc
ttccaaacactttccgaggcccgccagatccaggaggggctggccaagggagagattgac
atcgtcatcgggacccaccgactgttgcagtcggagacccggtttaaggacctaggtctg
ttgatcgtggacgaggagcaacggttcggagttgagcacaaggagaagctgaaggcgttg
cgcgcctcggtggacgtgctgaccatgtcggccacgccgatccctcgcaccttggaaatg
gcggtcaccggcctccgggagatgtcgaccatcgccaccccgccggaagaacgccatcca
gtcttgacctatgtgggggcgtgggaggccaagcaggtcgccgcgacgattcgtcgggaa
ctgctgcgggatggccaagtgttttacctgcacaaccgggtggagtccatcgataaggcg
gcccgcacgctacgtgatttggtgccggaggcgcgcatcgccaccgcacacgggcgcatg
ggggagaagcagctcgaacaaatcatgcagggcttctgggaaggcgaatacgacgtcctc
atctctaccaccatcgtggagtcgggcatcgacattcccaatgccaataccctgattgtc
gagcgcgccgaccacctggggctgtctcagttgcatcagatccgcggccgggttgggcgt
ggcagggaacgcgcgtacgcctatttcctgtatccgcccgagcagcccctatcggacacc
gcgcatgagcgtttggccacgatcgcccagcattcggagctgggggcgggcatgtatgtg
gccatgaaggacttggagattcgaggggccggaaacctcttgggagccgagcaatcggga
catatcgccgatgtcggtttcgacctgtacttgcgcatggttggcgacgcggtgcgccgt
tacaagggagccaaggacgaacaactcccgccagtgaagatcgagctgccggttgaagcc
cacctaccggtcgattacatctcagtggagcggctgcgcttggagatgtaccgcaagatc
gccgaagtgcgtgacgaggccgaactagatgcggtgcgcgaagaactggaggaccgctac
ggagccctgcccgactcggtggagaacttgctgcatgtggcgaacttccgccttttggcc
cgtcgcttcgggctgcaagaggtggcactccagggacgcaacttgcgtttctcacgggtg
acgctgcccgattccaagcaaatgcggctgaaacggcactacccggaagccgtgtacaag
gacaccgccgggctcatttccatcaagcgcccgtcgacggcccgggtgggtggcacgcca
atggaaggcctgccgctcttgcaatggtgcgccgatctcatcaccgatgtgtttccccag
cccagcgaccacagtcaacctgtggccaactaa
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