KEGG   Natrinema zhouii: HYG81_00900
Entry
HYG81_00900       CDS       T08017                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nay  Natrinema zhouii
Pathway
nay03030  DNA replication
nay03410  Base excision repair
nay03420  Nucleotide excision repair
nay03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nay00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HYG81_00900
   03410 Base excision repair
    HYG81_00900
   03420 Nucleotide excision repair
    HYG81_00900
   03430 Mismatch repair
    HYG81_00900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nay03032]
    HYG81_00900
   03400 DNA repair and recombination proteins [BR:nay03400]
    HYG81_00900
Enzymes [BR:nay01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HYG81_00900
    6.5.1.6  DNA ligase (ATP or NAD+)
     HYG81_00900
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HYG81_00900
DNA replication proteins [BR:nay03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HYG81_00900
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HYG81_00900
DNA repair and recombination proteins [BR:nay03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HYG81_00900
   NER (nucleotide excision repair)
    Other NER factors
     HYG81_00900
   MMR (mismatch excision repair)
    Other MMR factors
     HYG81_00900
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QLK26213
UniProt: A0A7D6CRN7
LinkDB
Position
complement(163519..165306)
AA seq 595 aa
MEFATFADRAGTIDAEPADLEIVAHVRELLAEAGDESEERRSSGAAGEPQTLEIVARFAQ
GRVFPAWDSTTLDIGPSACYEAIARAAGTNVSSDDVEDRLAEIGEIGDVAASYDFGGQQG
LGAFTGGGADDSGGDSSGGLTVREVYDTLEELAAAEGSGSQDRKVDLLFGLFNRCSSEEA
RYLARIVLSEMRIGVGEGTVRDAIAAAFNVPEDRVERALQVSNDYGQVARIARDEGVDGL
DALDLAVGRPVQAMLAQAGTVTEALEEWEETGVEWKYDGARIQLHHDPGDSGPAGESAAE
TRVFSRNMEDVTEALPEVVEFAEETLEEPAILDGEVVAIDEGGSPLPFQEVLKRFRRKHD
VAKAREDVSVRPVFFDCLHADGEDLLADPLTVRHDRLRSVLVGADSDPESADDEDIEGLS
LLWRTDDPDEIESIDADALEAGHEGIMLKDPDSAYSPGRRGKHWRKRKPDVETLDCVVTG
AEWGEGRRATFLGTFELSVRAGDTLETVGKVATGITDEKLAELTELLEPHIAAEEGQEVD
LEPAVVFEVGYEEIQSSPTYSSGYALRFPRFQGVRHDKDPDDADSLERLERLRGH
NT seq 1788 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcgccgaccgcgccgggacgatcgacgccgagcctgcggacctc
gagatcgtggctcacgttcgggaactgctcgccgaagcgggagacgagagcgaggaacga
cgttcttcgggcgctgcgggggaaccgcagaccctcgagatcgtcgcgcgcttcgcacag
ggacgagtgtttccggcctgggactcgacgacgctcgatatcggaccgagcgcgtgttac
gaggcgatcgcccgcgcggcggggacgaacgtgagtagcgacgacgtcgaggaccgtctc
gcggagatcggcgagatcggcgacgtggcggcgagttacgatttcggcggccagcaggga
ctcggtgcgttcaccggcgggggcgctgacgattccggcggcgatagtagcggtggcctc
accgttcgcgaggtctacgacaccctcgaggagctcgctgctgccgagggatcgggcagc
caggatcgcaaggtcgacctgctcttcgggctgttcaaccgctgttcgagcgaggaagcg
cgctacctcgcccgaatcgtgctctcggagatgcgcatcggcgtcggcgaggggacggtt
cgggacgccatcgcggcggccttcaacgttcccgaggatcgagtcgagcgcgcgctgcag
gtctcgaacgattacgggcaagtcgcacggatcgcgcgggacgagggagtcgacggcctc
gacgcgctggacctcgcggtcggccgacccgttcaggcgatgctcgcgcaggcggggacg
gtaacggaggcgctcgaggagtgggaggagaccggggtcgagtggaagtacgacggggcc
agaatacaactgcaccacgatcccggtgattcggggccggcgggcgagtcggcggcggag
acgcgcgtcttctcgaggaacatggaagacgtcaccgaggcgcttcccgaagtggtcgag
ttcgccgaggagacgctcgaggagcccgcgatcctcgacggcgaggtcgtcgcgatcgac
gaaggcgggagcccgctaccgtttcaggaggtgctcaagcgcttccggcggaaacacgac
gtcgcgaaggcccgcgaggacgtctcggtgcggccggtcttcttcgactgtctgcacgcc
gacggggaggacttgctcgcagacccgctgacggttcgacacgatcggctccggtcggtg
ttggtgggcgccgattccgaccccgaatccgcagacgacgaggatatcgagggactctcg
ctactctggcgcaccgacgatcccgacgagatcgagtcgatcgacgccgacgccctcgag
gccggccacgaggggatcatgctcaaagatcccgactccgcgtactcgccgggccggcgc
ggcaagcactggcgcaaacgcaaaccggacgtggagacgctggactgcgtagtgaccggc
gcggaatggggagagggtcggcgcgcgaccttcctcgggaccttcgaactctcggtacga
gcgggagataccctcgagacggtcggcaaggtcgcgaccgggatcaccgacgagaaactc
gcggagctgacggagctgctcgagccccacatcgcggccgaagagggtcaggaagtcgac
ctcgagccagcggtcgtcttcgaagtcggttacgaggagatccagtcctcgccgacctac
tcgtcggggtacgcgctgcggttcccgcggtttcagggcgtgcgtcacgacaaggatccg
gacgacgcggactcgctcgaacgactggagcgactacgtggtcactga

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