Candidatus Niyogibacteria bacterium NC_groundwater_707_Ag_S-0.2um_45_26: HYY55_02000
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Entry
HYY55_02000 CDS
T09897
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nbn
Candidatus Niyogibacteria bacterium NC_groundwater_707_Ag_S-0.2um_45_26
Pathway
nbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYY55_02000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbn03019
]
HYY55_02000
Messenger RNA biogenesis [BR:
nbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYY55_02000
BRITE hierarchy
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QQG46597
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Position
367010..368797
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AA seq
595 aa
AA seq
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MIRENRERRPVSAKRGGHRKTRSNFVYQNGNGQQKKFIPPAKPGVLRIIALGGFAEVGRN
MMFFEYGGDILIIDMGLQFPDENMHGVDYIIPNISYLENKKDRIRGVIITHGHYDHIGAV
PQLMSKLGNPTIYTTRLTAAIIQKRQEDYPYSPKLDIEYINEKTETKLGVFTIRYFPVTH
NIPEGVGLEIETPVGIIAHPGEFKFFYDRKLEPLGLEPFRQLGKKNVRLLMLDSTKSEEP
GRSVPEWQVEENIEELLKKAGGRVIVSTFASLLDRLTQIVHIADKLGRKVAVTGRSMQTN
LAIAQELGLIKLKRKTIIPIKEIDDHPDDKIVIITTGAQGEENAGLTRMASGSHREVRIK
PTDTVIFSSSIVPGNEMYVQTLRDNLARQGAIVYHYKIFGIHSGGHATRIELKETMEIVK
PQCFLPIHGFFYMRAVNAKLAEEAGINPKNVVVPDNGQILELTKDSIKLLDEKVPTNYVM
VDGLGVGDVKEVVLRDRQMLAADGIFVIIAVVDAQSGKVRGSPDIISRGFVYLRESKDLL
HQTRLITKKIVENAAQNMHPINWAWVKDNLRDDVGKFLFQKTHRRPMVLPVVIEV
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgataagagaaaatagggaaagaaggccggtttccgcgaaaagaggaggacaccgaaaa
acaagatcgaattttgtttatcaaaatggaaacggccagcaaaaaaaattcataccgccg
gccaaaccaggcgtattaagaataatcgctctgggaggatttgcggaagtcggacgcaat
atgatgttttttgaatatggcggcgatattttaataatagatatgggacttcagtttccg
gacgaaaatatgcacggcgttgactacatcatccccaacatttcatatctggaaaataaa
aaggacagaataagaggcgtaataatcacgcacggacattacgaccatataggcgccgta
ccgcagctgatgagcaaacttggtaatcccacgatttataccacacgactaacggcagcc
ataatccaaaaacgccaggaagactacccttattcgccgaagctggacattgaatatatt
aatgaaaaaaccgaaacaaaactcggcgtgtttacgattcgttattttccggtaacccac
aatattcccgagggcgtcggacttgaaatagaaacgcctgtcggaataatcgcgcacccg
ggggaatttaaattcttctatgaccgaaaattagaacctttgggacttgaaccgtttaga
cagctcggcaaaaaaaatgtccggcttttgatgctggacagcaccaaatcggaagaaccc
ggacgttcagtgcccgaatggcaggttgaagaaaacatagaagaattgctgaaaaaagca
ggcggccgcgtgattgtttcaacttttgcctcgctcctggaccgcctcacccaaatagtc
cacattgccgataagctcggacgaaaagtggccgtaaccggaagaagcatgcagaccaac
cttgccatagcccaagaactcggccttattaaattaaaaagaaaaaccataatcccgata
aaagaaatagacgaccatcctgacgataaaattgtcatcatcaccaccggcgctcaagga
gaagaaaacgccgggttaacccgtatggcctccggctctcaccgcgaagtcaggattaag
ccgaccgatacggtaatattttcttcgtccatcgtccccggaaacgaaatgtacgtccag
acgcttcgcgataatctggcccgacaaggagccatagtttatcattataagattttcggc
attcactcgggaggacacgccaccagaatagaactaaaagaaacaatggagattgttaaa
ccgcaatgtttcctgccgatacacgggttcttttatatgagggcggtcaatgccaagctg
gcggaagaagccggaattaacccgaaaaatgtagtggttccggacaacggccagattctg
gaactgaccaaagattccattaaactgctggacgaaaaagtgccgactaattacgttatg
gtggacggcctgggcgttggcgacgttaaagaggtggttttgcgcgaccgccagatgctc
gcggccgacggcatattcgtaatcattgccgtagttgacgcccaatcgggaaaagtccgc
gggtcgccggatataatttcccgcgggttcgtatatcttcgcgaatcaaaagatcttctg
catcaaaccagactgataaccaaaaaaatagttgaaaatgccgcccaaaatatgcacccc
ataaattgggcctgggtaaaagataaccttcgagacgatgtcggcaaattccttttccaa
aaaactcatcggcggccgatggtgttacccgtggtgattgaagtataa
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