Nocardia brasiliensis: O3I_036950
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Entry
O3I_036950 CDS
T02270
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nbr
Nocardia brasiliensis
Pathway
nbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O3I_036950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbr03400
]
O3I_036950
Enzymes [BR:
nbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O3I_036950
DNA repair and recombination proteins [BR:
nbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O3I_036950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
DUF3638
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFU05337
UniProt:
K0F6L2
LinkDB
All DBs
Position
complement(8293189..8296803)
Genome browser
AA seq
1204 aa
AA seq
DB search
MSTHRPPLAGLAAVAGADAALQTVTELVGKSSVELVAPSAVRPFVAAAIAAKRPLVVVTA
NGREADDLTVELAEMLGDTVAQFPSWETLPHERLSPGADTVGRRLEVLRRLAHPDDPIFA
EPLRVVVTTVRSLMQPMAGGLGDIEPVVLRVGAELDFDELLTRLVEFAYSRVDMVGKRGE
FAVRGGILDLFPPTADHPVRVEFWGDEITELRPFAVADQRSLSEVPVEVVVAPPCRELLL
TDAVRARAAEVAVANAADAALVEMLEKLAQGVPVDGMEALLPVLQPGELCLLTEVLPAGT
HVLLCDPEKIRTRAADLVRTGEEFLEASWTAASFGAAAPLGAHGLDLAASGYRPLSTVHE
SADQQDLPWWTLTPLTSGDPAEVVLPVLAGPAARGSDELVATIFASLRAHVATGGRAVVV
VAGHGTAQRILERLADADVPAAALDPGAEPAPGLVGVLCGSLHDGLIFDDAGLVVVAESD
LTGNRVTAPGEGKRLPAKRRNQVDPLALNAGDMVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPGKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIA
GELVQLYAARQAAPGHAFGPDTPWQQEMEDAFAFTETVDQMTAIAEVKSDMEKPVPMDRV
VCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGFPITVKGLSR
FTDPADARAVMEGMADGSVDIVVGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGGYNDKQVTAAIRRE
LLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVAVAHGQMNEDALESTVAGFWEREFDVL
ICTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTET
AYDRLATIAQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGKPIVTEEPKEVRIDLPVDAHIPPDYIASDRLRLEAYRKLASAQDDSSLASVVE
ELVDRYGPLPVEVGRLVSVAKLRLLAREYEVTEIAVTGTTLKISPLHLPDSKQMRLKRIY
PSAGYRAASGVISLPLPRVEDSVGADRVRDVVLLQYVADLLLALDGKAQGAVDLTTATEA
SAAR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccatcgtccaccgctggccggactggcggcggtcgccggtgcggatgccgcg
ttgcagaccgtcaccgagctggtcggcaagtcgtcggtcgagctggtggccccgtccgcg
gtacgcccgttcgtcgccgcggcgatcgcggcgaagcggccgctggtggtggtcacggcg
aacggtcgcgaggccgatgatctgaccgtggagctggccgagatgctgggcgatacggtc
gcgcagttcccctcctgggaaaccctgccgcacgagcggctctcgccgggcgcggacacg
gtcgggcgcaggctcgaggtgctgcgcaggctggcccaccccgacgacccgatcttcgcc
gagccgctgcgcgtggtggtgaccaccgtgcgctcgctgatgcagccgatggccggcggg
ctcggcgatatcgaaccggtggtgctgcgcgtcggcgccgaactggacttcgacgaattg
ctcacgcgcctggtcgaattcgcttacagccgggtcgacatggtcggcaagcgcggcgag
ttcgcggtgcgcggcggcatcctcgacctcttcccgccgaccgcggatcatccggtgcgc
gtggagttctggggcgacgagatcaccgagctgcgcccgttcgcggtcgccgatcagcgc
tcgctgagcgaggtgccggtcgaggtcgtcgtcgcgccgccgtgtcgcgagctgttgctc
accgatgcggtgcgcgcccgggcggccgaggtcgcggtcgccaacgcggccgacgccgcc
ctggtcgagatgctggagaagctggcccagggcgtcccggtggacggtatggaggccctg
ctcccggtgctgcaacccggcgagctgtgcctgctcaccgaggtgctgcccgcgggaacc
catgtgctgctgtgcgatccggagaagatccgcacccgcgccgccgacctggtgcggacc
ggcgaggagttcctggaggcgtcctggaccgcggcgtcgttcggggcggccgcgccgttg
ggcgcgcacggcctagacctggccgcctccggttaccgcccgctgtccaccgtgcacgag
agcgccgatcagcaggacctgccctggtggacgctcacgccgctcacctccggcgacccc
gcggaggtggtgctgccggtgctggccggccccgccgcgcgcggctccgacgaactcgtc
gcgaccatcttcgcctcgttgcgcgcgcacgtggccaccggcggccgcgcggtggtcgtg
gtggccggacacggtacggcgcaacgcattctggaacgcctggccgacgccgacgtgccc
gccgcggcgctggaccccggcgccgagccggcgcccgggctggtcggcgtgctgtgcggt
tcgttgcacgacggtctgatcttcgatgacgccggactcgtcgtggtagccgagtccgat
ctcaccggcaatcgggtcaccgcgcccggcgagggcaagcggctgccggccaagcggcgc
aaccaggtcgacccgctggcgttgaacgcgggcgacatggtggtgcacgaccagcacggc
atcggccggttcgtcgagatgatcgaacgcaccgtcggcggtgcccggcgggagtacctc
gtcatcgagtacgcgccgggcaagcgcggccagccgggcgaccggctgttcgtgccgatg
gagtcgctcgatcagctctcccgctatgtcggcggtgagatgccgagcctgtccaagctg
ggcggctcggactgggcgaatacgaaacgcaaggcgcgcaaggcggttcgcgagatcgcc
ggggagttggtgcagctctacgcggcccgccaggccgcgccggggcacgccttcgggccg
gacaccccgtggcagcaggagatggaggacgcgttcgcgttcaccgagaccgtcgaccag
atgaccgccatcgccgaggtcaaatcggatatggagaagccggttccgatggaccgcgtg
gtgtgcggcgacgtcggctacggcaagaccgagatcgcggtgcgtgccgcgttcaaggcg
gtgcaggacggcaagcaggtcgtcgtactggtgccgaccacgctgctggcgcaacaacat
ctgcaaaccttcaccgagcgcgtcgcgggcttcccgatcaccgtgaagggcctgtcccgg
ttcaccgatccggccgatgcgcgcgcggtcatggagggaatggccgacggcagcgtcgac
atcgtggtgggtacgcaccgcctgctccagaccggcgtgcgctggaaggacctggggctg
gtggtggtcgacgaggaacagcggttcggcgtcgagcacaaggaacacatcaaggccctg
cgcacccacgtcgacgtgctcaccatgtccgcgacgccgattccgcgcaccctggagatg
agcctggccggcatccgtgagatgtcgaccatcctcaccccgcccgaggaacggcacccg
gtgctcacctatgtcggcgggtacaacgacaagcaggtgaccgccgcgatccggcgcgag
ttgctgcgggacggccaggtcttctacgtgcacaaccgggtgtcctcgatcgacaaggcg
gccaagcggattcgggatctggtgccggaggcgcgggtcgcggtcgcgcacggtcagatg
aacgaggacgcgctcgaatccaccgtcgccggtttctgggagcgcgaattcgacgtgctc
atctgcaccaccatcatcgagaccggcctggacatctccaacgccaacaccctgatcgtg
gaacgcgccgacgcgctgggtctttcgcagctgcatcagctgcgcggccgggtcgggcgc
agccgggaacgcggctacgcctacttcctgtacccgccggagaagccgctcaccgaaacc
gcctacgaccggttggccaccatcgcgcagaattccgacctcggcgcgggcatggcggtc
gcgatgaaggacctcgagatccgtggcgcgggcaacgtgctcggcgccgagcagtcgggt
cacgtcgcgggcgtcggcttcgacctgtacgtccgcctggtcggcgaggcggtggaggcg
taccgggccgccgcggacggtaagccgatcgtcaccgaggagccgaaggaagtccggatc
gatctccccgtcgacgcgcatatcccgccggactacatcgccagcgaccggctgcggctc
gaggcgtaccgcaaactcgcctcggcacaggatgattcgtccctggcctcggtcgtcgag
gaactcgtcgaccgctacggtccgctgccggtggaggtcggccgcctggtctcggtggcg
aagctgcggctgctggcccgcgagtacgaggtcaccgaaatcgcggtcaccggaacgaca
ttgaagatctcgccgctgcatctgcccgattccaagcagatgcgcctcaagcggatctac
ccgagcgccgggtatcgcgcggcgagcggggtgatctcgctaccgctgccgcgggtcgag
gacagtgtcggcgccgaccgggtccgcgatgtcgtgctgctccaatacgtcgccgacctg
ctgctcgccttggacggaaaggcccagggcgcagtcgatctcaccaccgccaccgaggca
tcggccgcccgatga
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