KEGG   Candidatus Nitrosopelagicus brevis: T478_0864
Entry
T478_0864         CDS       T03537                                 
Name
(GenBank) ATP-dependent DNA ligase domain protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nbv  Candidatus Nitrosopelagicus brevis
Pathway
nbv03030  DNA replication
nbv03410  Base excision repair
nbv03420  Nucleotide excision repair
nbv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nbv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    T478_0864
   03410 Base excision repair
    T478_0864
   03420 Nucleotide excision repair
    T478_0864
   03430 Mismatch repair
    T478_0864
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nbv03032]
    T478_0864
   03400 DNA repair and recombination proteins [BR:nbv03400]
    T478_0864
Enzymes [BR:nbv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     T478_0864
    6.5.1.6  DNA ligase (ATP or NAD+)
     T478_0864
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     T478_0864
DNA replication proteins [BR:nbv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    T478_0864
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     T478_0864
DNA repair and recombination proteins [BR:nbv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     T478_0864
   NER (nucleotide excision repair)
    Other NER factors
     T478_0864
   MMR (mismatch excision repair)
    Other MMR factors
     T478_0864
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AJA93190
UniProt: A0A0A7V964
LinkDB
Position
695307..697064
AA seq 585 aa
MKFSIISDAFQQMEATTKRLELTDILVKLIQEIPEDVIAKAIYLIQGKLRPNFEGVELGI
AEKLVMRAMSKSSGIPLKKIEDDYNKGGDLGQTAENILQQKIQTTFASEVITLEKVYDTL
FKISKLEGKGSQEMKMKYVSSMLNDATPQESKFILKILLGTLRLGIAENTVMDALAIAFT
GKKENREIIENAYNVSSDLGKVAEVISTRGVEEIEKFQIKLFSPIRPMLADRIKSGEETV
EKFQEKFAAEYKLDGERAQIHKQKDKIEIFSRSLEIITSYYPDIVEKISKLIISEDVILE
AEVVAMNSNSGDFLPFQELMHRRRKYEIEEAVTKYPITVNFFDVLFSEGKNCMDMRYEER
RELLEKIIKQDDFARLIPMSIIESKEQVLEVLENSINSGCEGLMLKHLDSTYRAGIRGSN
WLKLKREYQNELGDSLDLVVVGAFFGKGRRTGKYGTLLLSTYNDEEDVFPSICKVGTGFT
DESLDQLYQILSPKVTLKKNPRIVSEMEADVWFEPELVIEIVASEITQSPIHKTALDKIK
EGTGLALRFPKFTGKIRTEKNSEDASTDEEVIALYKVQKKTENQE
NT seq 1758 nt   +upstreamnt  +downstreamnt
atgaaattttcaattatttcagatgcattccaacaaatggaagcaactaccaaaagactc
gagttaaccgacattcttgtcaaactaatacaagaaattccagaagatgtaattgcaaaa
gccatctatttgatacaaggaaaactgagaccaaactttgagggtgttgaacttggtatc
gcagagaaacttgtgatgagagcaatgtcaaaatcatcaggaataccattaaaaaaaatt
gaagacgattataacaaaggtggggatttaggacaaactgcagaaaatattttacagcaa
aaaattcaaacaacatttgcatcagaagtgataacgttagagaaggtttacgatacacta
ttcaaaatttcaaaattagagggaaagggctcgcaggaaatgaaaatgaagtatgtttca
agtatgctaaatgatgcaactcctcaagaatcaaaatttattttgaagattttactagga
acgctacgcctaggtattgcagaaaatacagtcatggatgcattagcaattgcatttacc
ggaaaaaaagaaaatagagaaattattgaaaatgcatacaatgtctcaagcgatttagga
aaagttgcagaagttatttcaactagaggagttgaagagattgaaaaatttcaaattaaa
ttattcagtccaattagaccaatgctagcagatagaataaagagcggagaagaaacagtt
gaaaaatttcaagaaaagtttgctgcagaatacaaattagatggagagagggcacagata
cataaacaaaaagataagatagaaattttttctaggagtttagaaataattacatcatat
tatccagacatagttgaaaaaatttcaaaactaattatttcagaagatgtgattttggaa
gcagaagtagttgcaatgaattcaaattcaggagattttttaccatttcaagaattaatg
catagaagaagaaaatatgaaattgaagaggctgtaacaaaatatcctattacggttaat
ttctttgatgtgttattttctgaggggaaaaattgcatggatatgagatatgaagaaaga
agagagttgttggagaaaattatcaaacaagatgattttgccagactaattccaatgtca
attatagaaagcaaagaacaagttctagaagttttagaaaattcaataaattcaggatgt
gagggattaatgttgaaacatctggattcgacgtatcgagcaggaattagaggaagtaac
tggttgaagcttaaaagagaatatcagaatgaattaggagatagtcttgatttagtagtc
gttggtgcattttttggtaaaggtcgaagaaccggcaagtatggaacactgttactatct
acttacaatgatgaagaagatgtttttccaagtatttgtaaagttggaacaggatttaca
gatgaaagtttagatcaattataccaaattctttcacctaaagtcactctgaaaaaaaat
ccaagaatagttagtgaaatggaggcagacgtgtggtttgaaccagaattagttatagag
atagtcgcatcagaaattacacaaagcccaatccataaaactgcgttggataaaattaaa
gaaggtacaggattagcattacgatttccaaaatttacagggaaaattagaactgagaaa
aattcagaagatgcatcaacagacgaagaagttatcgcattatacaaagtccaaaaaaag
acagaaaatcaagagtga

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