Nocardioides sp. JS614: Noca_1237
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Entry
Noca_1237 CDS
T00443
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Noca_1237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_1237
Enzymes [BR:
nca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Noca_1237
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Noca_1237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABL80751
UniProt:
A1SG16
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All DBs
Position
1313226..1314140
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AA seq
304 aa
AA seq
DB search
MAQPEKEEVRVQVDGRTLTISNLYKVLYPRTGTTKGEVLNYYAQVAPTLLPHLAGRCVTR
IRWPHGVHEGSFFEKNAPAGTPSWVRTAEVPTTGSRAQSSSDTLVFPIIEDLATLTWLVN
LAALELHVHQWTVDRSGRPRGADRVVVDLDPGEPAGLHECCRVALMVRDRLAERGLAAKP
VTSGSKGLHLYADLPERVPSEDSSALAKAVAEELQGEHPALVTATMTKARRAGKVFLDWS
QNAGSKTTVSPYSLRGRELPTVATPLAWAEVEAGAQDPMALRQFRFDEVLERVQEHGDLF
AGPR
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcccgagaaggaggaggtccgggtccaggtggacggccggaccctcaccatc
agcaacctgtacaaggtgctctacccccgcaccggcaccacgaagggggaggtcctcaac
tactacgcccaggtcgcgccgacgctgctgccgcacctcgcggggcgctgcgtcacccgg
atccgatggccgcacggcgtgcacgagggcagcttcttcgagaagaacgccccagccggc
accccgtcgtgggtgcggaccgccgaggtccccacgaccggcagccgcgcccagtccagc
tccgataccttggtcttcccgatcatcgaggacctggcgaccctcacctggctggtcaac
ctcgcggccctcgagctgcacgtgcaccagtggaccgtcgaccgcagcggccgcccgcgg
ggcgcggaccgggtcgtcgtcgacctcgacccgggggagccggccggcctgcacgagtgc
tgccgggtcgccctgatggtgcgcgaccggctcgccgagcgcgggctggcggccaagccg
gtcaccagcggcagcaagggcctgcacctgtacgccgacctgccggagcgggtgccgtcc
gaggactcctcggcgctggccaaggcggtcgccgaggagctccagggggagcacccggcg
ctggtgaccgcgaccatgaccaaggcccggcgcgcggggaaggtgttcctggactggtcg
cagaacgccggctcgaagaccaccgtctcgccgtactccctgcgggggcgagagctgccc
acggtcgcgacgccgctcgcctgggccgaggtcgaggcgggcgcccaggacccgatggcg
ctgcgccagttccgcttcgacgaggtgctcgagcgcgtccaggagcacggcgacctgttc
gccggcccccgctga
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