Nocardioides sp. JS614: Noca_4936
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Entry
Noca_4936 CDS
T00443
Name
(GenBank) DNA primase catalytic core, N-terminal domain
Organism
nca
Nocardioides sp. JS614
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Gene cluster
GFIT
Motif
Pfam:
TrwC
AAA_30
DNAG_N
AAA_19
Toprim_2
Toprim_4
Toprim_3
Toprim
Viral_helicase1
UvrD_C_2
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABL79516
UniProt:
A1SCI1
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All DBs
Position
pNOCA01:268640..274582
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AA seq
1980 aa
AA seq
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MGVHKLTAGDGYTYLTRQVAVHDATDRGHAGLADYYAEKGESPGRWFGAGLGALDLEVGS
QVTETHMRNLFGEGRHPDAERLENAVLDAGKSVEQAKKASQLGRVFARYLGNQPEFIQET
AKRYIAYNLAHGEHWKTPVPAEVRAQIRTELGNEHFLREHGRAPIDDRERGSFMAKATRQ
QTTAVAGYDLTFAPVKSVSTLWALADRDVAKEIEAAHHSAVEATLSWLEKEVLFTRRGRG
GLQQVKAKGLIAGMFTHRDARSSDPHLHTHVAVSNKVQDETGRWLAVDGRVLFKANVTLA
EMYNTLIESELIARLGVRFENRRSGLAKGVDKRPVREIVGVDERLAKTWSKRHSAIEARR
RELAAAFQTEHGRPPTEGEAVTLAEKAWDQTRQAKHAPRAEADQRAAWLTEAAAIIGSEQ
AVRDMVEGCLGHRPDSQDVTDEWVAETAQDVVERVAEDRATWQVWHLHAEAQRQARAHRV
RLPDLDAAVDRVVATAIADHSIAFNAPDPLTHAATAAEQDVTIPEPLQRTEHGVNGEEIV
SVYSLAGARQYTSQAVIDAERRIVESARRTGGRTISEVRVGIAIAEAAANELQLNAAQQS
LVREMATSGRAVQLALAPAGTGKTTAMQVLTRAWQDSGGTVIGLAPSAVAAQELGASINP
ETGDAGVGAGGKAMGLFQGPWRPGRKKVRADTLAKLVWHAEKGGAPSWVERINPKTLVLI
DEAGMAATTDLAAAIDYITSRGGQVRLVGDDRQLASVAAGGVLRDIAHQIGAVTLSEVHR
FRNRDGSLNHAEAAATLALREGDPSAIAFYADRGRIHVGDLGACADQAYAAWAADRAADT
DSVLIAPTRALVAELNTRARNDRLAGLDEKEIGRVLTLADGSRVSEGDRIITRENDRRLR
ISRTNWVKNGDRWHVKKVNADGSLRVVHDQLGKTITLPADYVSKTVQLGYATTVHGAQGI
TTGTCHVVLTGDEDRNLLYVALSRGKFANHLYLNVASDGDPHNLIRPEALIPPTALDRIA
EMLRRDGSPVSATTTLREQTNPHQLLGDMASRYHDAVTAGAENLIGTTGMDKIDAHAEAL
LTGLTEAPAWPTLRSHLALVALDEHSPLKLLTAAVGVGSLADARDPAAVLDARVDDLVAE
LTAARPHDRDTPPPADGPLPWLPGIPARLGEAHDWGPFAAAYHQLVREQIDAVREQARGW
TGATAPVWAQPFLEDEDADLRADLAVWRAVAGTDENDLRPTGDRNIGAPGAYQAKLNRAV
RAARPSYPFSQRTWYQVLPEVVRQDPWITPLCQRLARLERAGLPVTDYIKEALATDPSLA
GGQSGTDTDAPQSAEVDPRPLPDEQQAAALWWRLVPHLGPAALGADEHSANLLQPAWRTA
LAELVGTTKADYLQKSPAWPALVAAVDEACEHHGWTPAEILSRALAGVPQDGSLTGVEVA
DALVLRIAMLTDQPSEAPPPSDDEAPYPEADVPADPDLLPPEDADEFMAAFYRDQPDDNS
APVFHSPAPGEYDALATEPVDREPPPDEHDPTYDDVAIGDYPYVEDPYATTLPWEQAEEV
TAENAFPDPNQIPAERIHELNQQALAYFESCYPRSWAPDYLRERMGTDLTDQPNYALGYA
PGGGRSLMRHLTDQGATLDELTQAGLVSQRERDDGTTYCRDFFRDRLVLPIRDPHDPTSE
AILGFVGRRNPTKTDDDFAGPKYLNTRNTSIFTKGEALFGYAEARELLANGALPVIVEGP
MDALAITLGSNGAAVGLAPMGTALTINQIKLLRANIEMVNGRDRIAVATDSDPAGWKSAQ
KAFWHLTAADLDPTQLELPDGLDPAKLFETEGADAIAAAIENRSPLGDAMIDHLLRTAGH
WSETDVRQKLIHQAARILGSRGSESWLDGFERLRHKLHLAPGILEHQTVTESMERDRNRP
AYAQARIDEINAEERKRTAKADPQSRRRAAEQRLAAATTTPRRPGLDVPPTGPDHAGPAR
NT seq
5943 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgcacaagctgaccgcgggagacgggtacacgtacctgacccgtcaggtcgcc
gtgcacgatgcaaccgaccgggggcacgcgggactggccgactactacgccgagaagggc
gagtcgccgggccgttggttcggcgcggggctcggtgcgctcgacctcgaggtgggctcg
caggtcaccgagacccacatgcggaatctgttcggcgagggtcgccacccggacgcggag
cggttggagaacgccgtcctggacgcggggaagagcgttgagcaggccaagaaggcctct
cagctcggccgcgtgttcgcccgctacctgggcaaccagccggagttcatccaggagacc
gccaagcgctacatcgcctacaacctggcccacggggagcactggaagaccccggtgccg
gccgaggtgcgggcgcagatccgcaccgaactgggcaacgagcacttcctccgcgagcac
ggccgcgccccgatcgacgaccgcgagcgcggctccttcatggccaaggccacccgtcag
cagaccaccgccgtggctggctacgacctcaccttcgctccggtgaagtccgtctcgacg
ctgtgggcactggccgaccgggacgtcgccaaggagatcgaggccgcccaccactcggct
gtcgaggccaccctttcgtggctggagaaggaggtgctgttcacgcgccgcggccgcggc
ggcctccagcaggtcaaggccaaggggctgatcgcgggcatgttcacccaccgcgacgca
cgctcctccgaccctcacctgcacacccacgtcgctgtcagcaacaaggtccaggacgag
accggacgctggctcgccgtcgacggacgggtcctgttcaaggccaacgtcaccctcgcg
gagatgtacaacaccctcatcgagtccgagctgatcgcccggctgggggttcgtttcgag
aaccgccgcagcggtttggccaagggtgtcgacaagcggcccgtgcgcgagatcgtcggc
gtcgacgagcgtcttgccaagacctggtccaagcggcacagcgccatcgaggcccggcgc
cgcgaactggcagcagccttccagaccgagcacgggcggccgccgaccgaaggcgaggcc
gtcaccctcgcggagaaggcctgggaccagacccggcaggccaagcacgcaccccgcgcc
gaggccgaccagcgcgccgcctggctgaccgaggccgccgccattatcggcagcgaacag
gccgtccgcgacatggtcgagggctgcctcggacaccgtccggactcccaagacgtcact
gacgagtgggtcgccgagaccgcgcaggatgtcgtcgaacgggtcgccgaggatcgcgcg
acctggcaggtctggcacctgcacgctgaagcacagcgccaggcccgcgcccaccgcgtc
cggctgcccgacctcgacgccgccgttgaccgcgtcgtggccaccgcgatcgccgaccac
tcgatcgccttcaacgcccccgacccgctcacccacgccgccaccgcggccgagcaggac
gtgacgatccccgagccgttgcagcgcaccgagcacggggtcaacggcgaggagatcgtc
agcgtctacagcctcgccggcgcccgccagtacacctcccaggccgtcatcgacgccgag
cggcgcatcgtcgagtccgcccgccgcacgggaggccgcaccatcagcgaggtccgcgtc
ggcatcgcgatcgccgaagccgccgccaacgagctccagctcaacgccgcccagcagtcc
ctggtccgcgagatggccaccagcggccgcgccgtgcagctcgcgctcgcgcccgccggc
accggcaagaccaccgccatgcaggtcctcactcgcgcctggcaggactccggcggcacc
gtcatcggcctcgcaccttccgcagtcgcagcccaggaactcggcgcctccatcaacccc
gagaccggtgacgccggcgtcggtgccgggggcaaggccatgggcctgttccagggaccc
tggcgcccgggtcggaagaaggtccgcgccgacaccctggccaagctcgtgtggcacgcc
gaaaagggcggagcgccctcgtgggtggagaggatcaaccccaagaccctcgtcctgatc
gacgaggcaggcatggccgccaccaccgatctggcggccgcgatcgactacatcacctcc
cgcggaggccaggtgcggctggtcggtgacgaccggcagctagcctcggtcgccgccggc
ggcgtcctgcgcgacatcgcccaccagatcggcgccgtcaccctcagcgaagtgcaccgc
ttccgcaaccgcgacggcagcctcaaccacgccgaagcggccgccactctggccctgcgt
gaaggcgacccgtcggcgatcgcgttctacgccgaccgtggccgcatccacgtcggcgac
ctcggcgcctgcgccgaccaggcctacgccgcgtgggccgccgaccgagccgccgacacc
gactcagtcctcatcgcacccacccgcgccctcgttgccgaactcaacacccgggcccgc
aacgaccgcctcgccggcctcgacgagaaggagatcgggcgcgtactgacgctggccgac
ggctcgagggtctccgaaggtgatcggatcatcacccgcgagaacgaccgtcgcctgcgg
atcagccgcaccaactgggtcaagaacggcgaccgctggcacgtcaagaaggtcaacgcc
gacggctccctgcgggtggtccacgaccagctcggcaagaccatcaccctgcccgccgac
tacgtctccaagacggtccagctcggctacgcgaccaccgtgcacggcgcgcagggcatc
accaccggcacctgtcacgtcgtcctcaccggtgacgaagaccgcaatctgctctatgtc
gcgctctcccgcggcaagttcgccaaccacctctatctcaacgtcgccagcgacggtgac
ccgcacaacctgatccggcccgaggcgctgatcccgccgaccgcgctcgaccggatcgcc
gagatgctgcgccgcgacggctcgccggtctccgcgacgaccacgctgcgcgagcagacc
aacccgcaccagctgctcggggacatggcctcgcgttaccacgacgcggtcacggccggc
gccgagaacctgatcggcaccacgggcatggacaagatcgacgcgcacgccgaagcactc
ctgaccgggctgaccgaggcccccgcgtggccgacgctgcgctcccacctcgcgctcgtc
gcgctcgacgagcacagccccttgaagctgctgaccgcagccgtgggcgtcgggtcgctg
gccgacgcgcgcgaccccgccgcggtgctcgatgcccgggtcgacgacctggtcgccgaa
ctcaccgccgcccggccacacgatcgggacactcccccgccggccgacggaccgctgccc
tggctgcccggcatccccgcccggctgggcgaggcccatgactggggcccgttcgcggcc
gcctaccaccagctcgtgcgtgagcagatcgacgccgtccgcgagcaggctcggggatgg
accggcgccaccgcacccgtgtgggcacaacctttcctcgaggacgaggacgccgacctg
cgggccgatctcgccgtgtggcgggcagtggccgggaccgacgagaacgacctgcgcccc
accggcgaccgcaacatcggcgcccccggcgcctaccaggccaagctcaaccgggccgta
cgcgcggcacgtccgagctaccccttctcccagcgcacctggtaccaggtgctgcccgag
gtcgtccgccaagacccgtggatcacgccgctgtgccagcggctcgcccggctcgagcgc
gcagggctgcccgtaaccgactacatcaaggaagcgctcgccaccgatccctccctggcc
ggcggccagtccggcaccgacaccgacgcaccgcagagcgcggaggtcgacccgcggccg
ctgcctgacgaacagcaggccgccgccctgtggtggcgcctcgttccgcacctcgggccg
gctgcactcggcgccgacgagcactccgcgaacctgctgcaacccgcatggcggaccgca
ctggccgaactcgtcggcacgaccaaggccgactacctccaaaagtcacccgcctggccc
gcgctcgtcgccgcggtcgacgaagcctgcgagcaccacggctggaccccggccgagatc
ctctccagggcactggccggcgtcccccaagacgggtctctcaccggcgtcgaagtcgcc
gacgcgctcgtgctccgcatcgccatgctcaccgaccagccgtcggaagcgccgccgccc
agtgacgacgaggcaccgtaccccgaggccgacgtccccgcggaccccgacctgctccca
cccgaggacgcagacgagttcatggccgccttctaccgggaccagccagacgacaacagc
gcccctgtcttccactcccccgccccgggtgagtacgacgctctcgcaaccgagcctgtc
gaccgggaaccgccaccggacgagcacgacccgacgtacgacgacgtcgcgatcggcgac
tacccgtacgtggaggacccgtacgcgacgaccctgccctgggaacaggccgaggaggtc
accgccgagaacgccttccccgacccgaaccagatcccggccgagcggatccacgagctc
aaccagcaggccctggcctacttcgagtcctgctacccgcgctcgtgggcgccggactac
ctgcgcgagcggatggggaccgacctcaccgaccagcccaactacgccctcggatacgca
cccggcggcggtcgcagcctgatgcgccacctcaccgaccagggcgccaccctcgacgaa
ctcacacaggccggccttgtctcacagcgtgaacgcgacgacggcacgacgtactgccgc
gacttcttccgcgaccgactggtcttgcccatccgcgatccccacgaccccacgagcgag
gccatcctcggcttcgtcggccgccgcaaccccaccaagaccgacgacgacttcgccgga
ccgaagtacctgaacacccgcaacaccagcatcttcaccaagggcgaggcactcttcggg
tacgccgaagcccgcgaactcctcgccaacggcgcgctcccggtcatcgtcgaaggcccc
atggacgcactggccatcaccctgggcagcaacggcgccgccgtcggcctcgccccgatg
ggaaccgcgctcaccatcaaccagatcaagctgctgcgcgccaacatcgagatggtcaac
ggccgcgaccgcatcgccgtggccaccgactccgaccccgccgggtggaagtcggcgcaa
aaggccttctggcacctgacggccgcggacctcgaccccactcagctcgaactacccgac
ggcctggacccggccaagctgttcgagaccgagggtgccgacgcgatcgccgccgccatc
gagaaccggtccccactcggcgacgcaatgatcgaccacctgctgcgcaccgccggccac
tggtcagagaccgacgtccgccagaagctcatccaccaggccgcgcgcatcctcggctcc
cgaggctccgagagctggctagacggcttcgagcgcctgcgccacaagctgcacctcgcg
cccggcatcctcgagcaccagaccgtcaccgagagcatggagcgcgaccgcaaccgcccc
gcttacgcccaggctcgaatcgatgagatcaacgccgaagagcgcaaaaggacggccaag
gccgatcctcagtcccgccgccgggcagccgagcagcggctcgcagcggcaaccaccacg
ccccgccgacccggcctcgacgtgccgccaacaggtcccgatcacgcgggtcctgcccgg
tga
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